RNA id: TCONS_00007934


Basic Information

Item Value
RNA id TCONS_00007934
length 2253
RNA type mRNA
GC content 0.52
exon number 8
gene id XLOC_004153
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25712772 ~ 25734417 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGGAAGCTAAGGAAACGAGTTGCTCAGTCCCGAGCTGGAGGCTTTGGGAGGGGATTGGTCAGAGAAGAGGATCAGGATCAAGTTGGTCCATCCAGCCATGTTGACATGGATGCTCTACTCTGTCCACCTTCTCCATGCAGACTGAACTTCTCTCCAACGAGAGACACACTCACATATGCACAGGCTCAGCGGATGGTGGAGATCGAGCTGGAGGGAAGACTCCACCGTATCAACATCTGCGACCAGCTCTCTGTCGTAACAGAGGACGAGATGCTGGCTCAGGATCTGACAGAGTGCAACAGCAACAAAGAGAACAGCGAGCAGAGGCAGGGAAACAAGCAAGCTGCATCTAAAAGCAAAAAGAAAGATGGCAAACACACAgccaaaaagaaatcaggtgCCCCCCTGCCCAAGCCAACATTTCGTAAATTGGACAATTTCACAGTCTCAGATGCTCCCCCGCTTCCAGTGGCTTATTACCGCTATATGGAGAAGTCCGGGGAGGAGCTGGACAATGAGGCTGAGTACGACATGGACGAGGAGGACATGGCTTGGTTAGAGATGGTCAATCAGAAGCGTGTGTCTGACGGCCACGCTTCGGTTCCTCCTGATACATTTGAGTTACTGATTGACCGTCTTGAGCGAGAATCCATTTTAGAGTCCCGCAGCCAAGCGTTGTCCCAGAGCACCATTGATGAGGATGCCTACTGTTGTGTTTGCCTTGATGATGAGTGTCTCAATAGCAACGTCATCCTGTTTTGTGACATCTGCAACCTCGCCGTGCACCAGGAATGTTACGGGGTGCCTTACATCCCTGAGGGCCAGTGGCTGTGCAGGCGATGTCTGCAGTCCCCGTCCCGACCCGTCGATTGTGTCCTCTGTCCAAACAGAGGGGGTGCATTCAAACAAACCAGCGATGGAAGTTGGGCCCACGTCATCTGTGCCATATGGATCCCTGAAGTGTGCTTTGCCAACACTGTGTTCCTGGAGCCTGTGGAGGGAGTGAAGAACATTCCTCCTGCGCGGTGGAAGCTCACCTGTTACCTGTGCAAACAGAAAGGCAGGGGCGCGTCTATTCAGTGCCACAAAGCCAACTGCTACAGGGCGTTTCACGTCACCTGTGCGCAGAGAGCGGGTCTGTATATGAAAATTGACCCAGTGCGGGAGACCGGCACCAATGGCACCACTTTTACTGTGAAGAAGACTGCTTATTGCGAAAACCACTCACCTCCTGGCACGGGAACAGAGGGGTATGAAGATAACGGGTTGGTTGGGGGCAGGGGTAACAGAGGTCAGAGGTCGTACACATTAGGCCCTCCGCTGCAGCAGAACCAGAACGGGAGGAAAAAAGGGTCAGCAGCACAACAGAAGAAAACGCAGAAGAACTCAGGCGGAGGCTCACGAAAAACAGGAGTCCCACTTCTGCTAGTGCCGCAGATACCATCCTTTAGGCTGAACAAGATTTGCACAGGAGTCTCTGTTGAAAGGAAGAATCAGTTTATGCAGAGGCTCCACAATTACTGGCTGCTAAAGCGTCACTCTCGTAATGGCGTGCCGCTCATCCGCCGGCTCCATTCTCATCTGCAGGCCCAGAAGTCTGAGCAGAGAGAACCAGATGCAAAGTTGCAGGCGGTCAGGGAAGAGCTGAAGTATTGGCAGAAGCTTCGCCAGGACCTGGAAAAAGCCAGACTTCTTATTGAGCTCATACGAAAGAGGGAGAGACTCAAAAGAGAACAGATGAAACTTCAGCAGGCTGCACTAGAGCTTCAGCTCACCCCTGCGCTGGTGTTTCTGCGCGCTACACTGGAGCAGCTGAAGGAGAAAGACACTGATCACATTTTCACCACACCAGTCAATTTGAAGGAGGTTCCAGATTATCTTGAGTTTGTGACTGTGCCAATGGACTTCTCTACGATGCATGACAAGCTGGAGGCTCATAAATACTCATCAGTGGCAGACTTGGAAAACGATTTCAATCTCATGGTATCCAACTGTCTGAGGTACAACTCCAATGATACAGTGTTCCACAAAGCGGCTATGCAGCTCAGAGAGGTGGGCGGAGCCATCCTAAGACACGCCCAACACCAGGCGCTCAGCATAGGCCTGGATCCAAGCACAGGCATGCATCTGCCAGACAAGCCCATCCCACATAACACCACTGTCTCCTGGTGTGATGAAGGTGAGCACTTACACAAGCTTTTGACATGCTTTTGGACCCTGACAATCGTCTGGATTTGGTGGCATCTATGA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-730 Predicted to enable metal ion binding activity. Predicted to act upstream of or within chromatin organization. Predicted to be located in nucleus. Orthologous to human BRPF3 (bromodomain and PHD finger containing 3).

Ensembl:

ensembl_id ENSDART00000191612

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008798 lncRNA downstream 245025 25475305 ~ 25476980 (-) False XLOC_004150
TCONS_00007926 lncRNA downstream 245025 25475305 ~ 25476980 (-) False XLOC_004150
TCONS_00008797 lncRNA downstream 245423 25475305 ~ 25476582 (-) False XLOC_004150
TCONS_00007924 lncRNA downstream 308852 25412343 ~ 25413153 (-) True XLOC_004148
TCONS_00007921 lncRNA downstream 313109 25368112 ~ 25408896 (-) False XLOC_004147
TCONS_00008799 lncRNA upstream 889018 26619434 ~ 26666495 (-) False XLOC_004162
TCONS_00007965 lncRNA upstream 1771789 27502205 ~ 27507973 (-) False XLOC_004167
TCONS_00007962 lncRNA upstream 1772093 27502509 ~ 27503132 (-) False XLOC_004167
TCONS_00008800 lncRNA upstream 1813162 27543578 ~ 27625465 (-) False XLOC_004169
TCONS_00007969 lncRNA upstream 1862227 27592643 ~ 27625125 (-) False XLOC_004169
TCONS_00007930 mRNA downstream 182682 25529080 ~ 25539323 (-) True XLOC_004151
TCONS_00007929 mRNA downstream 183664 25529048 ~ 25538341 (-) False XLOC_004151
TCONS_00007925 mRNA downstream 260669 25436440 ~ 25461336 (-) True XLOC_004149
TCONS_00007923 mRNA downstream 303149 25411914 ~ 25418856 (-) False XLOC_004148
TCONS_00007922 mRNA downstream 337792 25382602 ~ 25384213 (-) True XLOC_004147
TCONS_00007935 mRNA upstream 21782 25752198 ~ 25777318 (-) False XLOC_004154
TCONS_00007936 mRNA upstream 25020 25755436 ~ 25775447 (-) True XLOC_004154
TCONS_00007937 mRNA upstream 52305 25782721 ~ 25829712 (-) False XLOC_004155
TCONS_00007938 mRNA upstream 84025 25814441 ~ 25829006 (-) True XLOC_004155
TCONS_00007939 mRNA upstream 102803 25833219 ~ 25853212 (-) True XLOC_004156
TCONS_00007931 other downstream 52050 25669839 ~ 25669955 (-) True XLOC_004152
TCONS_00007928 other downstream 189525 25528557 ~ 25532480 (-) False XLOC_004151
TCONS_00007927 other downstream 245820 25476099 ~ 25476185 (-) True XLOC_004150
TCONS_00007916 other downstream 516762 25205153 ~ 25205243 (-) True XLOC_004144
TCONS_00007913 other downstream 754118 24967771 ~ 24967887 (-) True XLOC_004142
TCONS_00007940 other upstream 127525 25857941 ~ 25931082 (-) False XLOC_004157
TCONS_00007943 other upstream 289683 26020099 ~ 26180714 (-) True XLOC_004157
TCONS_00007948 other upstream 503311 26233727 ~ 26237953 (-) True XLOC_004159
TCONS_00007950 other upstream 643582 26373998 ~ 26375518 (-) True XLOC_004160
TCONS_00007954 other upstream 839115 26569531 ~ 26577209 (-) True XLOC_004161

Expression Profile

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