RNA id: TCONS_00007936


Basic Information

Item Value
RNA id TCONS_00007936
length 2340
RNA type mRNA
GC content 0.45
exon number 18
gene id XLOC_004154
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25752198 ~ 25777318 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGgtggggtagggTGGAGAGATGCATGTGCAACATGCAGGCCGGCTCTCAAATGATCAAACTGAGAGGAAAATCCAAGGCTCTGGTGCGTCTCTTTTATCTAGATGAGCACAAGTCCTGTATCCGCTGGAGGCCTTCAAGGAAACATGAGAGAGCAAAAATCACCATAGACTCTATCCATGAGGTCTGTGAAGGAATGAGAACCGAGGTCTTTAGGCGATTTGCCAACAATAACTTTGATCCAAACTGCTGCTTCAGTATTTACCACGGAGACCACGTGGAGTCTCTTGACTTGGTTTCCACCAATGGAGAAGAGGCACGGACCTGGATCACTGGCCTTAAATACCTCCTGGCAGGCATCAGTGACGAGGACAGTCTGGCAAAAAGGCAACACTGTTGCAAATGGTTGAGACAGACCTTTTCAGAGGCAGACAAAAATGGAGATGGAAATCTGAGCATTGGAGAAGTCCTGCAGCTGCTTCACAAGCTCAACGTGAACCTCCCAAAGCAGAAAGTCAGAGAAATGTTCCAGGAGGCTGACACTGATGAAAACCAGGGGTCATTGACATTTGAGGAATTCTGCACCTTTTACAAACTGATCTCAACACGACGAGATCTTTATTTACTGATGATCAGCTACAGCAACCACAAAGAGCACCTGGACCTGAACGACCTGCAGCGCTTCTTAGAAAGCGAGCAAAAGatGGTAAATGTGACCAAAGAATACTGCAAAATGATCATTAACCAGTTTGAGCCATGTTCTCAAAACCAAAGTCATGTGGTGCTGGGTATTGATGGTTTCACCAACTACATGCGCAGTCCTGCAGGAGACATTTTTAACCCAGAACACTACCAAGTAAATCAGGACATGACCCAGCCGCTTACAAATTACTACATCGCGTCTTCGCACAACACTTACCTGACTGGAGATCAGCTGCTGTCTCAGTCTCGGGTTGACATGTATGCATATGTGCTTCAGATGGGCTGTCGCTGTGTGGAAGTTGACTGCTGGGATGGTCCTGATGGTGAACCTATTGTGCATCATGGATACACGCTTACCTCAAAAATCCTCTTTAAGGATGTTGTTGAGACAATCAACAAATACGCATTTGCCAAAACTCAATTCCCAGTGATACTCTCTATAGAGAACCACTGCACTGTGCCTCAGCAGAAGAAAATGGCTCAATACCTCATGGAAGTGCTACAGGACAAAGTGGACCTGTCAAACATAAACACAAACGAGTCCAGACGTCTGCCATCTCCAGAGGATTTGAAAGGCAAAATACTTGTCAAGGGCAAGAAACTGCCAGCAAACATTGACGCTGATGCTGATGAAGGGGACGTGTCTGATGAAGACAGCGGAGAAGAGGATGAGGAGGAAGAggggctaataattttgaccttgaatggtttaaaaaaattaaacactgcttttattctagccaaaataaaaaaaagactctccagaagaaaagatattataggaaatactgtgaaaaattccttACGAAGAAAAACCATGCGACTTTCTCGTGCCCTCTCTGATCTGGTCAAATACACCAAGTCAGTGCGTGTTCATGATATCGAAACCTGGCAAGTGTCCTCCTTAAACGAAAGCATAACCAATCAGATTCTCCAGCTGAAGCCTGCGCAGTTAGTTCGATTCAATCAACGGCAACTTTTACGAGTTTATCCCTCCAACTACCGTGTGGATTCAAGTAACTTCAATCCTCAGCCTTTCTGGAACGCAGGATGCCATTTAGTCGCTCTCAACTATCAAACAGAAGGCCGTATGCTGCAGCTGAACAGGGCCAAATTTGCGGCGAATGGAAACTGCGGCTATGTGCTGAAGCCAAAATGCATGTGTAAAGGTGCCTTTAATCCAGTGCTGGAAGACCCTTTGCCTGGACACAGGAAATCTCAGCTAGTGCTCAAGATTATTAGTGGCCAGCAGCTGCCCAAGCCAAAAGACTCTATGTTAGGGGACAGAGGAGAGATCATAGATCCCTTTGTTGAAGTGGAGATTATTGGATTGCCCATTGATTGCAATAAACAACAGACAAGAGTAGTGGATGACAATGGTTTTAACCCCACGTGGGAGGAGACTCTAGTGTTTACGCTGCACATGCCTCAGATTGCCTTAGTACGCTTTATGGTTTGGGACCACGATCCAATTGGACGAGACTTTATTGGACAGCGAACTATATCGTTTAAAAGCATGATGCCAGGTTATCGACATGTCTATTTAGAAGGCATGGAAGAAGCGTCAATATTTGTTCATGTTGCTGTTAATGACATCACAGGAAAGGTAACACTCTGTTATACTAGAGAGGAGGGATGA

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0007165 signal transduction biological_process
GO:0016042 lipid catabolic process biological_process
GO:0005509 calcium ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004629 phospholipase C activity molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-101112-1 Predicted to enable calcium ion binding activity and phosphatidylinositol phospholipase C activity. Predicted to act upstream of or within intracellular signal transduction and lipid catabolic process. Orthologous to human PLCH2 (phospholipase C eta 2).

Ensembl:

ensembl_id ENSDART00000161301

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008798 lncRNA downstream 278456 25475305 ~ 25476980 (-) False XLOC_004150
TCONS_00007926 lncRNA downstream 278456 25475305 ~ 25476980 (-) False XLOC_004150
TCONS_00008797 lncRNA downstream 278854 25475305 ~ 25476582 (-) False XLOC_004150
TCONS_00007924 lncRNA downstream 342283 25412343 ~ 25413153 (-) True XLOC_004148
TCONS_00007921 lncRNA downstream 346540 25368112 ~ 25408896 (-) False XLOC_004147
TCONS_00008799 lncRNA upstream 843987 26619434 ~ 26666495 (-) False XLOC_004162
TCONS_00007965 lncRNA upstream 1726758 27502205 ~ 27507973 (-) False XLOC_004167
TCONS_00007962 lncRNA upstream 1727062 27502509 ~ 27503132 (-) False XLOC_004167
TCONS_00008800 lncRNA upstream 1768131 27543578 ~ 27625465 (-) False XLOC_004169
TCONS_00007969 lncRNA upstream 1817196 27592643 ~ 27625125 (-) False XLOC_004169
TCONS_00007933 mRNA downstream 21019 25714095 ~ 25734417 (-) False XLOC_004153
TCONS_00007932 mRNA downstream 21526 25712772 ~ 25733910 (-) False XLOC_004153
TCONS_00007934 mRNA downstream 25020 25722005 ~ 25730416 (-) True XLOC_004153
TCONS_00007930 mRNA downstream 216113 25529080 ~ 25539323 (-) True XLOC_004151
TCONS_00007929 mRNA downstream 217095 25529048 ~ 25538341 (-) False XLOC_004151
TCONS_00007937 mRNA upstream 7274 25782721 ~ 25829712 (-) False XLOC_004155
TCONS_00007938 mRNA upstream 38994 25814441 ~ 25829006 (-) True XLOC_004155
TCONS_00007939 mRNA upstream 57772 25833219 ~ 25853212 (-) True XLOC_004156
TCONS_00007941 mRNA upstream 107170 25882617 ~ 26040594 (-) False XLOC_004157
TCONS_00007942 mRNA upstream 107170 25882617 ~ 26180714 (-) False XLOC_004157
TCONS_00007931 other downstream 85481 25669839 ~ 25669955 (-) True XLOC_004152
TCONS_00007928 other downstream 222956 25528557 ~ 25532480 (-) False XLOC_004151
TCONS_00007927 other downstream 279251 25476099 ~ 25476185 (-) True XLOC_004150
TCONS_00007916 other downstream 550193 25205153 ~ 25205243 (-) True XLOC_004144
TCONS_00007913 other downstream 787549 24967771 ~ 24967887 (-) True XLOC_004142
TCONS_00007940 other upstream 82494 25857941 ~ 25931082 (-) False XLOC_004157
TCONS_00007943 other upstream 244652 26020099 ~ 26180714 (-) True XLOC_004157
TCONS_00007948 other upstream 458280 26233727 ~ 26237953 (-) True XLOC_004159
TCONS_00007950 other upstream 598551 26373998 ~ 26375518 (-) True XLOC_004160
TCONS_00007954 other upstream 794084 26569531 ~ 26577209 (-) True XLOC_004161

Expression Profile

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