RNA id: AMCG00002206


Basic Information

Item Value
RNA id AMCG00002206
length 514
RNA type mRNA
GC content 0.52
exon number 3
gene id AMCG00002206
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7159632 ~ 7166827 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGAAACAAACGAAGCAAAGATTGTTTAAGCAACAGGACGCAAATCTGAGGAGCATGGGGACGACACACACAGCCATCCTAGCTGGATTCCTTGTTCTCCTTTGTCAGCAGGTGGTGGTCAGCCAGTTTTCAAACCCTGGCTTAGAAAACTTCGGACGTGTGATGGAACAGTTAGAGAAGAAATATAGGGAAGAGGaagcaatgaaaaatgcaaGAGATTACCAGAACCTGAACCAAGAAGCAGAAGACAGCGAGACAGACCCATGGTCAGACCCTGAGACAGTGAGGCTAAATAACCAGGCTCGGATGACCAGGCTGATAGACCTGCTGTTTGGGGGCAGAGAGAAGAGCGCCTCAGGATGCTTCGGCAGAAGAATGGACCGGATCGGTTCCATGAGTGCCCTGGGCTGTGGGGGCTCAAAGAAAGTCCTGCCTGAAGCGGCGAGGGCCAACCCCCCACATGAGAGGGTCTTGGACCGGGAGAGCGAAGGAGAACTTCAGACGGTAATGTAG

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152324 lncRNA upstream 361589 6792976 ~ 6798043 (+) True G121526
TU152177 lncRNA upstream 832151 6327197 ~ 6327481 (+) True G121417
TU152159 lncRNA upstream 881732 6277518 ~ 6277900 (+) True G121402
TU151928 lncRNA upstream 1589385 5474136 ~ 5570247 (+) True G121228
TU151892 lncRNA upstream 1883709 5243709 ~ 5275923 (+) True G121198
TU152516 lncRNA downstream 394239 7561066 ~ 7562732 (+) True G121680
TU152524 lncRNA downstream 479891 7646718 ~ 7648316 (+) True G121688
TU152562 lncRNA downstream 662980 7829807 ~ 7834211 (+) True G121722
TU152587 lncRNA downstream 743731 7910558 ~ 7917243 (+) True G121741
TU152632 lncRNA downstream 778538 7945365 ~ 7953624 (+) True G121767
AMCG00002205 mRNA upstream 1783 7156487 ~ 7157849 (+) True AMCG00002205
AMCG00002207 mRNA upstream 6311 7152473 ~ 7153321 (+) True AMCG00002207
AMCG00002204 mRNA upstream 9219 7145725 ~ 7150413 (+) True AMCG00002204
AMCG00002203 mRNA upstream 31172 7120579 ~ 7128460 (+) True AMCG00002203
AMCG00002202 mRNA upstream 40446 7110777 ~ 7119186 (+) True AMCG00002202
AMCG00002211 mRNA downstream 11612 7178439 ~ 7191115 (+) True AMCG00002211
AMCG00002214 mRNA downstream 152148 7318975 ~ 7323901 (+) True AMCG00002214
AMCG00002213 mRNA downstream 159163 7325990 ~ 7378440 (+) True AMCG00002213
AMCG00002216 mRNA downstream 215711 7382538 ~ 7390651 (+) True AMCG00002216
AMCG00002215 mRNA downstream 226989 7393816 ~ 7411230 (+) True AMCG00002215
TU152254 other upstream 557024 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other upstream 557024 6586654 ~ 6602608 (+) True AMCG00002190
TU151873 other upstream 1936134 5218830 ~ 5223498 (+) True AMCG00002152
TU151430 other upstream 3620078 3537619 ~ 3539554 (+) False AMCG00002098
TU151426 other upstream 3623204 3533814 ~ 3536428 (+) False AMCG00002098
TU152502 other downstream 226973 7393800 ~ 7396561 (+) False AMCG00002215
TU152752 other downstream 1586899 8753726 ~ 8762079 (+) False AMCG00002245
TU153130 other downstream 2677453 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other downstream 2677453 9844280 ~ 9849012 (+) False AMCG00002272
TU153306 other downstream 3401085 10567912 ~ 10594304 (+) False AMCG00002294

Expression Profile