RNA id: AMCG00002211


Basic Information

Item Value
RNA id AMCG00002211
length 3182
RNA type mRNA
GC content 0.48
exon number 12
gene id AMCG00002211
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7178439 ~ 7191115 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCAAGCGTGGGCGCCCTCAACACGTGACCGGCGGTGCTCTATTTTGGTGCGGCCGCGGCGTGTCGGGTTTGAATTCATTGATCCGCAGCACACACCGGGAGTATCATAAAACTTTAAATCCACACCAGCAAGCGGCCAGCTGCCTTCAGTGTTCATACCCGAGTTATCTGCACAGTGGGCGCCAGTAAGCATGGTGAATCAGGTTGTGCGCGTGGACAGCGGTGGCCAGCCGTGCCGCAGCGACTCCAGTGGGGTGAGCAGCAACGGGGGGGACAGCTCCAAGGAGAGCTCGCGCTGCTCCACTCCCATCCTCGACACCGACCGCACCGACCGCCTGCGTGACAAGATGAGGCGCCGCACCGAGTCCGGCGACAGCTGGTTCTCCCTGGAATTCTTCCCCCCCCGCACTGCCAGCGGAGCGGTTAACCTCATCTCCAGGTTTGACCGAATGGGGGCAGGTGGGCCGCTCTTCATCGATGTGACCTGGCACCCATCAGGGGACCCCGGCTCCGACAAAGAGACCTCATCCATGATGATTGCGAGCACAGCAGTCAACTATTGCGGTCTGGAGAGTGTCCTTCACCTCACCTGCTGCAACCAGACTAAGGACCAGATCACGGCACACTTGAACAAGGCCAAGCACCTGGGCCTGAAGAACATCATGGCTCTGAGAGGAGATCCAGTGGGAGATGAatgggaagaagaagaaggcgGTTTCAGTTACGCCACAGACCTGGTCAAACATGTTCGCTGTGAATTTGATGATTACTTTGACATTTGTGTTGCTGGTTACCCCACTGGTCACCCTGAGGCTGATAGCTATGAGCAAGACCTGATACATCTGAAGGAGAAGGTGGACGCAGGGGCGGATTTCATCATTACGCAGCTGTTCTTCAGGCCAGAGACCTTCCTCAAGTTCGTCACGGACTGCAGGGCCATTGGGATCACCTGCCCCATTCTGCCTGGCATCTTCCCCATTCAGGGTTACCAGTCTCTGCGCCAGCTGGTGAAGCTCTCTAAGCTGGAGGTGCCTGATGAGATCATGAAGGTGATTGAGCCCATCAAGGACAATGACGCTGCCATCCGCAACTATGGCATCGACCAGGCAGTGGACATGTGCAAAGTGCTGCTAGACAGCGGTGTAGTACCTGGGCTGCACTTTTATACGCTCAACAGAGAGGTGGCCACCATGGAGGTCCTGAGACAACTAGGCATGTGGATTGAAGACCCCAGGCGTCCTCTTCCTTGGGCTGTCAGTGCTAATCCAAAACGCAAAGTGGAGGACGTCAGACCGATCTTCTGGGCTACCAGACCCAAGAGCTACATCTACAGAACCCAGGACTGGGATGAGTTCCCCAATGGAAGATGgGGGAACTCCTCCTCACCGGCCTTTGGAGAGCTGAATGATTATTACCTCTTTTACCTCAAGAGCAAGTCCTCCAAAGAGGCTCTCTTGAAGATGTGGGGGGAGGAGCTCATGAGTGAGGAGAGCGTCTATGAGGTGTTCACCAGCTACATTACCGCGAAACCCAACCAGGCTGGGCACAAGGTGATGTGTCTGCCATGGCACGATGACCCCCTTGCTCCAGAGACCAACCTGCTCAAGGCGGAGCTGGAGAAGGTCAACCGACGTGGCATCCTGACCATCAACTCGCAGCCCAACATCAACGGCAAACCTTCCTCGGACCCCGTGGCATATCTGGAGTTCTTCACATCAAGTGAAAATGTGACGGCGCTTCTTAAAgtactgaaaaaatatgaacCTCGTGTGAACTATCACATTGTGAATGTCAAGGGCGAGAACACCACGAACGCTCATGAAATGCAGCCCAATGCCGTGACCTGGGGGATTTTTCCTGGGCGAGAGATCGTACAGCCAACCGTGGTGGACCCAGTCAGCTTCATGTACTGGAAGGACGAGGCCTTTGCTCTGTGGATTGAACAGTGGGCTAAACTGTATGAGGACGAGTCTCCATCACGCATGATCATCAAGTACATCCATGACAATTATTATCTAGTCAACCTGGTGGACAATGACTTCCCTCTGGACAACTGTCTGTGGCAGGTCATTGATGACATGTTTGAGCTGCTGGACTCGCCCGCGGAGCACCCGGAGTAATCTAGGCCCTCACACCGGCTGGActaccccaacccccccacccccagcctcCCTGACGCATTCGTTGAATGCAGCTTTAGAGAACTTAATTTCAAAAAGActtgaaattagttttttaaagaaatctgaTTCTTTGGGTATACAATGTATACatggaaaccaaaaaaaaagcctggAGTGAGATGCTCATCCATATTGTTGGTTAAATGACATGAATCCACAGGTATGTGATGACTTTATAGTGGCAGTGTGGGCGAACACTCGAGAGGTTACCAGTGTACACAGAGGCTTACACTAAGCAGCGAGTGTGTGATGCTTACTTCTGTGATCTGCTGTGGAAATTGCCTGGGTAAATACGGTCATGTCTTTATACCCGTTTTCACTGTAGTTCatttaagcttttaaaaattaatgcAGTGTGGATGTGCTTCAAAAATActgcaattatgtatttatatattatggcATAATAAGCTCCATTTCCAGTGGTATATTCCcactttttatattgtttcaatttgtctgtttacatatttattccTTTACAAAAGTGGTATTTTATGTAAAGataaaatgaatgtgcttttttttatattcagaaaGGTAGCAAGGAATATCTGAATGGGGTAGGGGTGTGTGTATcactatacattttttattcaggcatttgaaactgtttatttttaaatagtataaAATGTATGATAAGAACCATTTGTTCAGTTTGAGCTTTGTGGGAAGGTTGCTGGTTGTGAACTGCAATTTATGTGCATGTCCAAAAGCATGAACTGAAGATTGGACTGTTCAAagtatatttctgcattttgttaagACCAAAGATAAACCCCTGTCAATCCACATTATTCATACTAGACACCTCTGTTTCACTTATGGGTTTATCAGCTCAAACTACAACTAGGAAATAAGGTTTATACTGCTTTATATGTTTTTGGATTTGCATTATTCTTGATTGTTTCCCTTGGAGTATTTCAATGTAaagtgtattatattatattatattggaATAACTTTttaggaataaataaaatatatttcaaagtt

Function

GO: NA

KEGG:

id description
K25004 MTHFR; methylenetetrahydrofolate reductase (NADPH)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152324 lncRNA upstream 380396 6792976 ~ 6798043 (+) True G121526
TU152177 lncRNA upstream 850958 6327197 ~ 6327481 (+) True G121417
TU152159 lncRNA upstream 900539 6277518 ~ 6277900 (+) True G121402
TU151928 lncRNA upstream 1608192 5474136 ~ 5570247 (+) True G121228
TU151892 lncRNA upstream 1902516 5243709 ~ 5275923 (+) True G121198
TU152516 lncRNA downstream 369951 7561066 ~ 7562732 (+) True G121680
TU152524 lncRNA downstream 455603 7646718 ~ 7648316 (+) True G121688
TU152562 lncRNA downstream 638692 7829807 ~ 7834211 (+) True G121722
TU152587 lncRNA downstream 719443 7910558 ~ 7917243 (+) True G121741
TU152632 lncRNA downstream 754250 7945365 ~ 7953624 (+) True G121767
AMCG00002206 mRNA upstream 11612 7159632 ~ 7166827 (+) True AMCG00002206
AMCG00002205 mRNA upstream 20590 7156487 ~ 7157849 (+) True AMCG00002205
AMCG00002207 mRNA upstream 25118 7152473 ~ 7153321 (+) True AMCG00002207
AMCG00002204 mRNA upstream 28026 7145725 ~ 7150413 (+) True AMCG00002204
AMCG00002203 mRNA upstream 49979 7120579 ~ 7128460 (+) True AMCG00002203
AMCG00002214 mRNA downstream 127860 7318975 ~ 7323901 (+) True AMCG00002214
AMCG00002213 mRNA downstream 134875 7325990 ~ 7378440 (+) True AMCG00002213
AMCG00002216 mRNA downstream 191423 7382538 ~ 7390651 (+) True AMCG00002216
AMCG00002215 mRNA downstream 202701 7393816 ~ 7411230 (+) True AMCG00002215
AMCG00002217 mRNA downstream 467143 7658258 ~ 7663689 (+) True AMCG00002217
TU152254 other upstream 575831 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other upstream 575831 6586654 ~ 6602608 (+) True AMCG00002190
TU151873 other upstream 1954941 5218830 ~ 5223498 (+) True AMCG00002152
TU151430 other upstream 3638885 3537619 ~ 3539554 (+) False AMCG00002098
TU151426 other upstream 3642011 3533814 ~ 3536428 (+) False AMCG00002098
TU152502 other downstream 202685 7393800 ~ 7396561 (+) False AMCG00002215
TU152752 other downstream 1562611 8753726 ~ 8762079 (+) False AMCG00002245
TU153130 other downstream 2653165 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other downstream 2653165 9844280 ~ 9849012 (+) False AMCG00002272
TU153306 other downstream 3376797 10567912 ~ 10594304 (+) False AMCG00002294

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00070475 True 3812 mRNA 0.44 12 NC_007119.7 47219121 ~ 47252552 (+)
grasscarp (Ctenopharyngodon idella) CI01000050_06343875_06352994.mRNA True 3621 mRNA 0.41 10 CI01000050 6343319 ~ 6354241 (+)