RNA id: AMCG00003569


Basic Information

Item Value
RNA id AMCG00003569
length 2744
RNA type mRNA
GC content 0.53
exon number 17
gene id AMCG00003569
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 9820927 ~ 9853672 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTTCCCAGAGTGCGGCTTCTTTGGCATGTACGACAAAATCTTACTCTTTCGCCATGACCTGAACTCGGAAAACATCCTGCAGCGGCTGACGTCAGTGGAGGATATCCACGAGGGAGATCTGATCGAAGTGGTTCTCTCTGCCCTAGCTACGGTAGAAGATTTCCAGATCCGGCCACATGCTCTCTACGTGCATTCGTACAAAGCCCCTACCTTCTGTGATTACTGCGGGGAGATGCTCTGGGGCCTCGTCCGACAAGGCCTGAAATGTGAAGGATGTGGTCTGAACTATCACAAGcgctgtgcatttaaaataccaAACAACTGCAGTGGCGTGAGGAAGAGGCGTCTGTCCAATGTCTCTTTGCCTGGGCCGGGGCTATCAGTCCCCAGGCCTGCGCCGATCGAGCATGCCACCGTGTCCACAGAAGAGCAGCGCTCTCACCAAGAGGCTGGCAAACGGATTCCCTCCTGGAGCGGGCGTCCCATCTGGATGGAGAAGATGGTTCTGGGTCGGGTGAAGGTGCCTCACACCTTTGTGGTCCACTCCTACACACGCCCCACCATCTGTCAGTACTGCAAGCGTCTGCTCAAGGGCCTGTTCCGTCAGGGCATGCAGTGTAAAGACTGTAAGTTCAATTGTCACAAGCGGTGTGCCTCCAAAGTTCCCCGAGACTGTCTTGGAgaagttgtttttaatggagGCAAGTACATGTAACCCGCCAGTCCTGGGCCCGACTCGGACATCACCATGGAGGTGGACAGCAGTGACATCCACAGTGACGGCAGTCGAGGCCTGGATGACTCGGAGGAGCCTTCTACCCCCGAGGATAAGATCTTCTTCATGGACTCCCCAGACCTGGACGGAGAGAAGGATGAGGAAGCAATCAAAACCATCAGTCCTTCCACAAGCAGCAACATCCCTCTGATGCGAGTGGTGCAGTCCATCAAGCACACAAAGCGGAAGAGCAGCACCATGGTGCGGGAGGGCTGGATGGTACACTACACCAGCAGAGACAACCTGAGAAAGAGACATTACTGGAGACTGGACAGCAAGTGCCTTACGCTTTTTCAGAATGACACTGGAGCCAAGTATTACAAGGAAATCCCCCTCTCCGAAATCCTCCAAGTGGACCCAGCTCGTGATTTTACCATCCTGGCCCAGGGCAGCAACCCTCATTGCTTCGAGATCATCACGGACACCATGGTGTACTATGTGGGGGAAAACAACGGAGGGAACTACCAGAACCCAGTGCTAGCTGCCTCCGGAGTGGGCTTTGAGGTGGCTCAGAGCTGGGAGAAAGCGATCCGACAGGCCCTTATGCCAGTAACACCTCAGGCCAGTGTGTGCACTGTAGGAGGACAAGGCAAAGACCACAAAGAGCTGTCCATCAGCATATCTGTTTCCAACTGTCAGATTCAGGAAAATGTGGATATAAGCTCGGTATACCAGATTTTTGCTGACGAGGTATTGGGATCAGGACAGTTTGGAATCGTTTATGGCGgcaaacacaggaaaacaggaagagatgtggcCATTAAAGTCATTGACAAAATGAGGTTTCCCACCAAGCAAGAGAGTCAGCTGAGAAACGAAGTTGCCATTTTACAGAACCTGCACCATCCCGGGATAGTGAACTTGGAGTGCATGTTTGAAACTCCCGAGAGGGTTTTTGTTGTCATGGAGAAGCTGCATGGCGACATGCTGGAGATGATTCTGTCCAGCGAGAAGAGCCGGCTGCCGGAACGCATCACTAAGTTTCTTGTTACGCAGATTCTGGTGGCTTtaagacatttgcatttcaagaACATAGTACACTGTGACCTGAAGCCTGAGAACGTTCTCCTAGCATCAGCAGAGCCATTTCCTCAGGTGAAGCTGTGTGACTTCGGCTTCGCCCGCATCATTGGGGAGAAATCGTTCCGGCGCTCTGTGGTGGGGACCCCGGCCTACCTGGCCCCTGAGGTCCTGAGGAGTAAAGGGTACAACCGCTCCTTAGACATGTGGTCCGTGGGAGTCATCATCTACGTGAGCCTCAGCGGCACGTTCCCCTTCAACGAGGACGAAGACATCAATGACCAGATTCAGAACGCAGCCTTCATGTATCCGCCCAACCCCTGGAGAGAGATATCTGGCGAAGCCACTGATCTAATCAACAATCTCCTTCAAGTGAAAATGAGAAAGCGGTACAGTGTGGACAAGTCTCTCAGCCACCCGTGGCTCCAGGACTACCAGACGTGGCTGGACCTCAGGGAGTTCGAGACGCGGATCGGGGAGCGCTACATCACCCACGAGAGTGACGACGCGCGCTGGGAGGAGTACGCCGACGCGCACAACCTGGCTTATCCAAAACATTTCATCATGGCGCCCAACCTGGACGACATGGAGGAGGATCCGTAGCGGCGCCATGGCCTGGATGGAGGACTTGTAGAGGCAGACTGCCTGCCAGTTAAGAGACCTGGGAACTGTTCACGAGACCCGAGATGATCTGGCACGGCTCGTCGTCGGACTCTGGTGGAGCAGTCCGGGGAGACGGAACATGGGAGATGTGTGGGGGTGTGGACTGTAGAGGTCCGCTGTGTGAAATGGCAGACTGTGCCTTGAAGGTGCGTTTTGTGGTGTTTAACCGAGGTGTATGTGAAGCCTAGAGGTGACGTGGACTTCAGGTTTTTATAGTTTGAAATATTCCTGATTTATGATGAGAATCTCTttttatagcttttttttttttttttttttaacctt

Function

GO: NA

KEGG:

id description
K06070 PKD; protein kinase D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1863 lncRNA upstream 117449 9700557 ~ 9703478 (+) True G1574
TU1701 lncRNA upstream 714163 9100618 ~ 9106764 (+) False AMCG00003544
TU1676 lncRNA upstream 793295 9009297 ~ 9027632 (+) False G1430
TU1675 lncRNA upstream 798354 9009297 ~ 9022573 (+) True G1430
TU2011 lncRNA downstream 383184 10236856 ~ 10238261 (+) True G1706
TU2056 lncRNA downstream 577992 10431664 ~ 10457765 (+) True G1747
TU2211 lncRNA downstream 1196479 11050151 ~ 11050644 (+) True G1855
TU2254 lncRNA downstream 1374287 11227959 ~ 11228275 (+) True G1891
TU2270 lncRNA downstream 1477367 11331039 ~ 11403029 (+) False G1902
AMCG00003570 mRNA upstream 39171 9777684 ~ 9781756 (+) False AMCG00003570
AMCG00003562 mRNA upstream 46830 9760860 ~ 9774097 (+) True AMCG00003562
AMCG00003558 mRNA upstream 280846 9538315 ~ 9540081 (+) True AMCG00003558
AMCG00003556 mRNA upstream 296482 9521395 ~ 9524445 (+) True AMCG00003556
AMCG00003557 mRNA upstream 301531 9511564 ~ 9519396 (+) True AMCG00003557
AMCG00003568 mRNA downstream 12428 9866100 ~ 9875843 (+) True AMCG00003568
AMCG00003571 mRNA downstream 39106 9892778 ~ 9894988 (+) True AMCG00003571
AMCG00003575 mRNA downstream 325670 10179342 ~ 10181960 (+) True AMCG00003575
AMCG00003576 mRNA downstream 376449 10230121 ~ 10231671 (+) True AMCG00003576
AMCG00003580 mRNA downstream 622165 10475837 ~ 10495920 (+) True AMCG00003580
TU1883 other upstream 40025 9777508 ~ 9780902 (+) True AMCG00003570
TU1763 other upstream 557459 9255828 ~ 9263468 (+) True AMCG00003551
TU1569 other upstream 1168523 8649125 ~ 8652404 (+) True AMCG00003534
TU1202 other upstream 3326022 6487692 ~ 6494905 (+) True G1012
TU2334 other downstream 1636513 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 1720059 11573731 ~ 11577329 (+) True G1989
TU2685 other downstream 3183765 13037437 ~ 13042597 (+) True AMCG00003648
TU2754 other downstream 3301388 13155060 ~ 13156627 (+) False AMCG00003655
TU2954 other downstream 4564844 14418516 ~ 14419732 (+) True G2440

Expression Profile