RNA id: TU230179


Basic Information

Item Value
RNA id TU230179
length 511
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G169997
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 24765730 ~ 24766240 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttgtcacagtttagcccgtgtctgtctcgttgtgtctccctctcctggtctattgtgctactgttgtgttttggtcctgtctccgccctagccccaccctgtcattagtgatttgtaaccccgccccctcttgattgatcctcaggtgtttccagtttcctgttccctccatgtgtatataagcccctttgtttcaagccttctttgtctagtcttttgttagtttgtttgctgTCTGTGATCAGGTTTGTGTGATTCCttgctgtgtgtctgtcaggttggtttttgtttctagagttactggtttcttagtcttgatttatactttattctcatctttgttattttagttatttcagtcttgtatttttgtcttgcgtTTACccgtgtttattttctgtttatattcagtgaaactttggtttattttgtttgtttgtcagtttgttttagtttgtttaataaataaagtaattattctGCACTTTTGTCCATCCCCTCACCTACGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230170 lncRNA downstream 117836 24647546 ~ 24647894 (-) True G169989
TU230168 lncRNA downstream 154400 24611038 ~ 24611330 (-) True G169987
TU230152 lncRNA downstream 405429 24278083 ~ 24360301 (-) True G169976
TU230161 lncRNA downstream 412822 24307650 ~ 24352908 (-) False G169980
TU230135 lncRNA downstream 628663 24106465 ~ 24137067 (-) True G169963
TU230181 lncRNA upstream 4726 24770966 ~ 24771170 (-) True G169999
TU230186 lncRNA upstream 116786 24883026 ~ 24883288 (-) True G170004
TU230191 lncRNA upstream 137215 24903455 ~ 24903676 (-) True G170009
TU230198 lncRNA upstream 155302 24921542 ~ 24924642 (-) True G170013
TU230199 lncRNA upstream 155302 24921542 ~ 24924642 (-) False G170013
XM_022680465.1 mRNA downstream 566773 24110733 ~ 24198957 (-) True arhgap15
XM_022680461.1 mRNA downstream 1198885 23095230 ~ 23566845 (-) True LOC103024947
XM_022680463.1 mRNA downstream 1300214 23313716 ~ 23465516 (-) True LOC103024627
XM_022680464.1 mRNA downstream 1465694 23241340 ~ 23300036 (-) True LOC111194931
XM_007235858.2 mRNA downstream 2206348 22512903 ~ 22559382 (-) True LOC103024581
XM_022680467.1 mRNA upstream 710687 25476927 ~ 25489657 (-) True LOC111188175
XM_022680671.1 mRNA upstream 725121 25491361 ~ 25495739 (-) True LOC111194961
XM_022680010.1 mRNA upstream 735700 25501940 ~ 25506295 (-) True LOC111194864
XM_022680477.1 mRNA upstream 918827 25685067 ~ 25720774 (-) False LOC103035913
XM_022680476.1 mRNA upstream 918827 25685067 ~ 25718202 (-) True LOC103035913
TU230159 other downstream 441225 24312583 ~ 24324505 (-) True G169980
TU229637 other downstream 1870298 22894768 ~ 22895432 (-) True G169567
TU229422 other downstream 2407323 22338439 ~ 22358407 (-) False man1a2
TU229253 other downstream 2942692 21822713 ~ 21823038 (-) True G169286
TU229165 other downstream 3099607 21650569 ~ 21666123 (-) False cryl1
TU230256 other upstream 735895 25502135 ~ 25509416 (-) False LOC111194864
TU230416 other upstream 1130355 25896595 ~ 25905482 (-) False LOC103030841
TU230949 other upstream 3134554 27900794 ~ 27902899 (-) False LOC111194963
TU231269 other upstream 3919810 28686050 ~ 28687679 (-) True G170854
TU231746 other upstream 7134108 31900348 ~ 31903527 (-) False gabpa

Expression Profile