DATASET ID: GSE152982 (wild type)

Basic information

Tissue / Organ trunk
Experiment type baseline
Sample 1.25dpf, untreatment
Source dataset ID GSM4631066
Project ID GSE152982
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Skeletal muscle cells ENSDARG00000002768 (pvalb2) protein_coding marker DOI:10.1371/journal.pone.0254024
    1 Skeletal muscle cells ENSDARG00000017441 (mylz3) protein_coding marker DOI:10.1371/journal.pone.0254024
    1 Skeletal muscle cells ENSDARG00000014196 (myl1) protein_coding marker DOI:10.1371/journal.pone.0254024
    1 Skeletal muscle cells ENSDARG00000041065 (hspb1) protein_coding marker DOI:10.1371/journal.pone.0254024
    2 Spinal cord ENSDARG00000053569 (sox3) protein_coding marker DOI:10.1371/journal.pone.0254024
    3 Epidermal cells ENSDARG00000054616 (cldni) protein_coding marker DOI:10.1371/journal.pone.0254024
    4 Slow muscle ENSDARG00000042245 (myl13) protein_coding marker DOI:10.1371/journal.pone.0254024
    4 Slow muscle ENSDARG00000062592 (myl10) protein_coding marker DOI:10.1371/journal.pone.0254024
    5 Fibroblasts ENSDARG00000012405 (col1a1a) protein_coding marker DOI:10.1371/journal.pone.0254024
    5 Fibroblasts ENSDARG00000071586 (tgfbi) protein_coding marker DOI:10.1371/journal.pone.0254024
    6 Neuron ENSDARG00000033655 (stmn1b) protein_coding marker DOI:10.1371/journal.pone.0254024
    7 Lateral mesoderm ENSDARG00000039579 (cfd) protein_coding marker DOI:10.1371/journal.pone.0254024
    7 Lateral mesoderm ENSDARG00000008305 (hand2) protein_coding marker DOI:10.1371/journal.pone.0254024
    8 Ionocytes ENSDARG00000032849 (ndrg1a) protein_coding marker DOI:10.1371/journal.pone.0254024
    8 Ionocytes ENSDARG00000076833 (atp1b1b) protein_coding marker DOI:10.1371/journal.pone.0254024
    9 Vascular endothelium ENSDARG00000023713 (aqp1a.1) protein_coding marker DOI:10.1371/journal.pone.0254024
    9 Vascular endothelium ENSDARG00000014059 (cldn5b) protein_coding marker DOI:10.1371/journal.pone.0254024
    10 Melanophores ENSDARG00000006008 (dct) protein_coding marker DOI:10.1371/journal.pone.0254024
    10 Melanophores ENSDARG00000091298 (pmela) protein_coding marker DOI:10.1371/journal.pone.0254024
    11 Xanthophores ENSDARG00000058734 (prdx1) protein_coding marker DOI:10.1371/journal.pone.0254024
    12 Red blood cells ENSDARG00000087390 (hbbe1.3) protein_coding marker DOI:10.1371/journal.pone.0254024
    12 Red blood cells ENSDARG00000079305 (hbae3) protein_coding marker DOI:10.1371/journal.pone.0254024
    13 Floor plate -- (ctgfa) -- marker DOI:10.1371/journal.pone.0254024
    13 Floor plate ENSDARG00000040159 (wnt4b) protein_coding marker DOI:10.1371/journal.pone.0254024
    14 Periderm cells ENSDARG00000104359 (anxa1c) protein_coding marker DOI:10.1371/journal.pone.0254024
    15 Notochord ENSDARG00000031483 (col9a1b) protein_coding marker DOI:10.1371/journal.pone.0254024
    16 Mucous secreting cells ENSDARG00000070480 (agr2) protein_coding marker DOI:10.1371/journal.pone.0254024
    16 Mucous secreting cells ENSDARG00000037790 (pvalb8) protein_coding marker DOI:10.1371/journal.pone.0254024
    17 Macrophages ENSDARG00000090783 (mfap4) protein_coding marker DOI:10.1371/journal.pone.0254024
    17 Macrophages ENSDARG00000056874 (lygl1) protein_coding marker DOI:10.1371/journal.pone.0254024

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)