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| Symbol | Location | Gene type | Genome version | Species |
|---|---|---|---|---|
| si:ch211-147d7.5 | 20: 37831352 ~ 37831939 (-) | protein_coding | GRCz11 | Danio rerio |
: marker.| Dataset ID | Tissue / Organ | Experiment type | Sample | Cell type | Marker class | Evidence | |
|---|---|---|---|---|---|---|---|
| GSE173972 (HET, ezh1+|-) | embryo | hematopoietic | 1.25dpf, Kdrl-positive embryos |
Epithelial cells (cluster: 11) |
potential marker |
NA |
|
| GSE168695 (5dpf) | embryo | baseline | 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos |
HR ionocytes (cluster: 5) |
potential marker |
NA |
|
| PRJNA564810 (1dpf) | embryo | baseline | 1dpf, a single-cell transcriptome atlas for zebrafish development |
Epidermal cells (cluster: 14) |
potential marker |
NA |
|
| GSE158142 (12hpf) | head | baseline | 12hpf, 6 somites, untreatment |
Periderm cells (cluster: 17) |
potential marker |
NA |
|
| GSE158142 (18hpf) | head | baseline | 18hpf, 18 somites, untreatment |
Periderm cells (cluster: 17) |
potential marker |
NA |
|
| GSE158142 (20hpf) | head | baseline | 20hpf, 21-22 somites, untreatment |
Periderm cells (cluster: 11) |
potential marker |
NA |
|
| GSE158142 (3dpf) | head | baseline | 3dpf, untreatment |
Otic vesicle (cluster: 17) |
potential marker |
NA |
|
| GSE123241 (wild type) | neuromast | baseline | 5dpf, wild type during sensory hair cell regeneration, lateral line sensory |
Hair cells (cluster: 7) |
potential marker |
NA |
|
| GSE123241 (fgf3 mutants) | neuromast | regeneration | 5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory |
Hair cells (cluster: 6) |
potential marker |
NA |
|
| GSE123241 (fgf3 siblings) | neuromast | regeneration | 5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory |
Hair cells (cluster: 6) |
potential marker |
NA |
|
| PRJNA605021 (hair cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae |
Hair cells (cluster: 1) |
potential marker |
NA |
|
| PRJNA668529 (3d) | olfactory rosette | disease | 3mpf, intranasal 100ng r-Spike 3 days |
Neuronal progenitor (cluster: 16) |
potential marker |
NA |
|
| GSE158099 (runx1 -|-) | whole body | hematopoietic | 2.5dpf, cd41:GFPlow-runx1-/- |
Epidermal cells (cluster: 10) |
potential marker |
NA |
|
| GSE158099 (WT) | whole body | baseline | 16dpf, cd41:GFPlow-WT |
Epidermal cells (cluster: 14) |
potential marker |
NA |
|
| GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- |
Epidermal cells (cluster: 13) |
potential marker |
NA |
|
| PRJNA415636 (brain) | brain | baseline | adult, Zebrabow M, brain | NA | NA | NA | |
| PRJNA554650 (6.5dpf) | brain | baseline | 6.5dpf, whole brain of nr1d1:VNP fish | NA | NA | NA | |
| GSE158142 (8dpf) | brain, eye | baseline | 8dpf, untreatment | NA | NA | NA | |
| GSE158142 (15dpf) | brain, eye | baseline | 15dpf, untreatment | NA | NA | NA | |
| GSE158142 (5dpf) | brain, eye | baseline | 5dpf, untreatment | NA | NA | NA | |
| PRJNA610520 (3.5dpf) | caudal hematopoietic tissue | baseline | 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. | NA | NA | NA | |
| PRJNA610520 (4.5dpf) | caudal hematopoietic tissue | baseline | 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. | NA | NA | NA | |
| GSE144944 (fgfr3 -|-) | cranial vault | growth | 1mpf, fgfr3 -/- | NA | NA | NA | |
| GSE144944 (fgfr3 +|+) | cranial vault | baseline | 1mpf, fgfr3 +/+ | NA | NA | NA | |
| PRJNA656271 (2dpf) | embryo | baseline | 2dpf, FACS-isolated EGFP+ cells | NA | NA | NA | |
| PRJNA706197 (18hpf) | embryo | baseline | 18hpf, FACS sorted sox10:nEOS cells | NA | NA | NA | |
| GSE126647 (control) | embryo | baseline | 1.17dpf, control nkx2.5:ZsYellow+ cells | NA | NA | NA | |
| GSE106587 (WT) | embryo | baseline | 12hpf, 6 somites, wild-type TLAB embryo | NA | NA | NA | |
| PRJNA564810 (5dpf) | embryo | baseline | 5dpf, a single-cell transcriptome atlas for zebrafish development | NA | NA | NA | |
| PRJNA656271 (24hpf) | embryo | baseline | 24hpf, FACS-isolated EGFP+ cells | NA | NA | NA | |
| PRJNA640816 (2dpf) | embryo | baseline | 2dpf, FACS isolated -4.9sox10:EGFP+ cells | NA | NA | NA | |
| GSE126647 (Pbx4-depleted) | embryo | growth | 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells | NA | NA | NA | |
| GSE173972 (KO, ezh1-|-) | embryo | hematopoietic | 1.25dpf, Kdrl-positive embryos | NA | NA | NA | |
| GSE106587 (MZoep mutant) | embryo | baseline | 12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo | NA | NA | NA | |
| GSE158849 (labeled) | embryo | baseline | 6hpf, WT, 4sUTP injected (labeled) | NA | NA | NA | |
| PRJNA564810 (2dpf) | embryo | baseline | 2dpf, a single-cell transcriptome atlas for zebrafish development | NA | NA | NA | |
| PRJNA656271 (1.5dpf) | embryo | baseline | 1.5dpf, FACS-isolated EGFP+ cells | NA | NA | NA | |
| PRJNA640816 (2.9dpf) | embryo | baseline | 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells | NA | NA | NA | |
| GSE158849 (unlabeled) | embryo | baseline | 6hpf, WT, 4sUTP injected (unlabeled) | NA | NA | NA | |
| GSE173972 (WT, ezh1+|+) | embryo | baseline | 1.25dpf, Kdrl-positive embryos | NA | NA | NA | |
| GSE158142 (2dpf) | head | baseline | 2dpf, untreatment | NA | NA | NA | |
| GSE158142 (14hpf) | head | baseline | 14hpf, 10 somites, untreatment | NA | NA | NA | |
| GSE158142 (24hpf) | head | baseline | 24hpf, untreatment | NA | NA | NA | |
| GSE158142 (16hpf) | head | baseline | 16hpf, 14 somites, untreatment | NA | NA | NA | |
| GSE158142 (1.5dpf) | head | baseline | 1.5dpf, untreatment | NA | NA | NA | |
| PRJNA415636 (pancreas, liver) | hepatopancreas | baseline | adult, Zebrabow M, pancreas and liver | NA | NA | NA | |
| PRJNA754013 (zebrafish) | hypothalamus | baseline | adult, male, female, untreatment | NA | NA | NA | |
| GSE150498 (untreated ctrl) | intestine | baseline | 6dpf, untreated ctrl | NA | NA | NA | |
| GSE150498 (wildtype, 2X DSS+BZA) | intestine | disease | 6dpf, wildtype, 2X DSS+BZA | NA | NA | NA | |
| GSE150498 (wildtype, 1X DSS) | intestine | disease | 6dpf, wildtype, 1X DSS | NA | NA | NA | |
| GSE150498 (DSS treated) | intestine | disease | 6dpf, DSS treated | NA | NA | NA | |
| GSE150498 (nod2-|-, 2X DSS) | intestine | disease | 6dpf, nod2-/-, 2X DSS | NA | NA | NA | |
| GSE150498 (wildtype, untreated) | intestine | baseline | 6dpf, wildtype, untreated | NA | NA | NA | |
| GSE150498 (nod2-|-, 1X DSS) | intestine | disease | 6dpf, nod2-/-, 1X DSS | NA | NA | NA | |
| GSE150498 (nod2-|-, 2X DSS+BZA) | intestine | disease | 6dpf, nod2-/-, 2X DSS+BZA | NA | NA | NA | |
| GSE150498 (wildtype, 2X DSS) | intestine | disease | 6dpf, wildtype, 2X DSS | NA | NA | NA | |
| GSE150498 (nod2-|-, untreated) | intestine | disease | 6dpf, nod2-/-, untreated | NA | NA | NA | |
| PRJNA605021 (supporting cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae | NA | NA | NA | |
| PRJNA668529 (3h) | olfactory rosette | disease | 3mpf, intranasal 100ng r-Spike 3 hours | NA | NA | NA | |
| PRJNA668529 (control) | olfactory rosette | baseline | 3mpf, intranasal PBS | NA | NA | NA | |
| GSE148591 (3mpf) | pituitary | transplant | 3mpf, graft transplantation during early embryogenesis | NA | NA | NA | |
| GSE148591 (6mpf) | pituitary | baseline | 6mpf, male, Sox17:CreERT2 | NA | NA | NA | |
| PRJNA415636 (primary pancreatic islet) | primary pancreatic islet | baseline | adult, Zebrabow M, primary pancreatic islet | NA | NA | NA | |
| PRJNA672101 (WT) | retina | baseline | 5mpf, three retinas from WT zebrafsih | NA | NA | NA | |
| GSE122680 (1.5dpf) | retina | baseline | 1.5dpf, WT, untreatment | NA | NA | NA | |
| GSE175929 (5mpf) | retina | baseline | 5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg | NA | NA | NA | |
| GSE122680 (3dpf) | retina | baseline | 3dpf, WT, untreatment | NA | NA | NA | |
| PRJNA551501 (2mpf) | thyroid gland | baseline | 2mpf, Tg(tg:mVenus-T2A-NTR) | NA | NA | NA | |
| PRJNA551501 (8mpf) | thyroid gland | baseline | 8mpf, Tg(tg:mVenus-T2A-NTR) | NA | NA | NA | |
| GSE163907 (24hpf) | trunk | baseline | 24hpf, trunk tg(sox10:GFP) positive cells | NA | NA | NA | |
| GSE152982 (wild type) | trunk | baseline | 1.25dpf, untreatment | NA | NA | NA | |
| GSE131136 (all) | trunk, skin | baseline | 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone | NA | NA | NA | |
| GSE159709 (melanoma) | tumor | disease | adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells | NA | NA | NA | |
| PRJNA641144 (D_PRO) | tumor | disease | adult, ZMEL1-PRO cells in vitro individual culture | NA | NA | NA | |
| PRJNA641144 (C_PRO) | tumor | disease | adult, ZMEL1-PRO cells in vitro co-culture | NA | NA | NA | |
| GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- | NA | NA | NA | |
| GSE158099 (WT) | whole body | baseline | 10dpf, cd41:GFPlow-WT | NA | NA | NA | |
| GSE158099 (runx1 -|-) | whole body | hematopoietic | 10dpf, cd41:GFPlow-runx1-/- | NA | NA | NA | |
| GSE158099 (WT) | whole body | baseline | 6dpf, cd41:GFPlow-WT | NA | NA | NA | |
| GSE158099 (runx1 -|-) | whole body | hematopoietic | 6dpf, cd41:GFPlow-runx1-/- | NA | NA | NA | |
| GSE158099 (WT) | whole body | baseline | 2.5dpf, cd41:GFPlow-WT | NA | NA | NA | |
| GSE176129 (pdgfrb-positive) | whole body | baseline | 5dpf, FACS-isolated pdgfrb-positive cells | NA | NA | NA |