CI01180000_01542059_01545609 (GGPS1)


Basic Information

Item Value
gene id CI01180000_01542059_01545609
gene name GGPS1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 1542059 ~ 1546080 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01180000_01542059_01545609.mRNA
GTGCTGGAGCTGCAGATTCACTCATCAAGAACATTAATTAATCTCACTTGCGCTGTATTCCAGACAGAAAAGGTCATTATTGAGGTGACAGAGATGCTGCACAATGCCAGTCTGCTGATCGACGATATTGAAGACAGCTCTAAGCTGCGGCGCGGTTTTCCGGTGGCCCACAGCATCTACGGCGTGCCGTCGGTCATCAACTCCGCCAACTACGTCTACTTCCTTGGCCTGGAGAAGGTGTTGATGTTAGAGCACCCCGAGGCCGTGCGCGTCTTCACCCGCCAGCTGCTGGAGCTGCACCGCGGACAGGGCCTGGACATCCACTGGCGGGACACGTACACCTGCCCGACCGAGGCAGAGTACCGGGCCATGGTGCTTCAGAAAACCGGCGGGCTTTTCGGCCTCGCTGTGGGACTCATGCAGCTCTTCTCTGACTGGAAACGAGATCTCAAGCCGCTTTTGGACACTTTGGGCCTTTTCTTCCAGATACGTGATGACTACGCCAACCTGAATTCGAAAGAGTACAGCGCCAACAAGAGCTTCTGCGAAGACCTGACGGAAGGGAAGTTCTCTTTCCCCACCATTCACGCCATCTGGTCCCGTCCCGAGAGCACGCAAGTGCAGAATATCCTGCGCCAGCGCACAGAGAACGTGGATATTAAACGCTACTGCGTCGACTACCTGGAGAAGGTGGGCTCCTTCGCTTACACCCGTCAGACGCTGATGGATCTGGAAGTGGAGGCCTACCGGCTCATCGCAGATCTCGGAGGGAATCCGGAACTGGAGGCTTTAATGGAGCATCTGAGTCGCATGTATAAAGAGCCCGAGGGCGGAGCTTCTGCTGGCCAATCAAAAGAGCTTGGGGGCGGAGCTGCAGCCAGCCAAACAAAACAATGATCCGCGTTAATCTCGTCTGCACACTGTGAACAGACTTCTCAAACCTTTGTCTTTCAACTGTTATTTTGTCTGCACAGCAAATTGCCTTCGGTCCAAATTCTCGTTTTGTCTCATATTTCAAGGAGCTGTAACTGGCGTATGAAGTGTGAAAGAAAAAGTTTACTGGCCTCTTATCAGAATTGCTGCTCGTTTCAGTATGAATGACAACCGCAAACAAACATTTAACGTTTAAATGCTGTCATTTCACCTCAAACACAAAACAAATACATTGTTTTGCTTTAAGAAAATGAAGCCAATTTAAATGGACCTCTACCATTTGTTCATTTTTTTTTTTTTTTGGCATCACAATTATTTTCAATAATATAATTTTAATAATAATAATTTTAACTTTATTATTATTGCTACATTTAAACATTTGTTGTACTGCCTCTAATAGAATATCAAAATCAGTAAATAGTATATTTTACTGT

Function

symbol description
ggps1 Predicted to enable prenyltransferase activity. Predicted to be involved in isoprenoid biosynthetic process. Orthologous to human GGPS1 (geranylgeranyl diphosphate synthase 1).

NR:

description
Geranylgeranyl diphosphate synthase 1

GO:

id name namespace
GO:0008299 isoprenoid biosynthetic process biological_process

KEGG:

id description
K00804 GGPS1; geranylgeranyl diphosphate synthase, type III

RNA

RNA id representative length rna type GC content exon number start site end site
CI01180000_01542059_01545609.mRNA True 1367 mRNA 0.47 2 1542059 1546080

Neighbor

gene id symbol gene type direction distance location
CI01180000_01492241_01493781 NA coding upstream 47613 1491671 ~ 1494446 (+)
CI01180000_01380859_01385445 NA coding upstream 156276 1380701 ~ 1385783 (+)
CI01180000_01372608_01374455 NA coding upstream 167512 1370761 ~ 1374547 (+)
CI01180000_01196818_01224406 EGLN1B, EGLN1, EGLN1A coding upstream 317144 1196786 ~ 1224915 (+)
CI01180000_00955725_01050852 SIPA1L2 coding upstream 490233 954922 ~ 1051826 (+)
CI01180000_01576739_01578505 GNG4 coding downstream 30659 1576739 ~ 1579406 (+)
CI01180000_01747067_01755038 GPR137B coding downstream 200987 1747067 ~ 1755257 (+)
CI01180000_01828938_01830221 DNAJC12 coding downstream 282858 1828938 ~ 1830814 (+)
CI01180000_01832263_01834405 COX5B.2, COX5B2, COX5B coding downstream 285933 1832013 ~ 1834999 (+)
CI01180000_01865632_01870994 NA coding downstream 319429 1865509 ~ 1871089 (+)
G678869 NA non-coding upstream 109196 1431965 ~ 1432863 (+)
G678929 NA non-coding upstream 110318 1431505 ~ 1431741 (+)
G678868 NA non-coding upstream 111092 1429873 ~ 1430967 (+)
G678928 NA non-coding upstream 113720 1428052 ~ 1428339 (+)
G678891 NA non-coding upstream 184467 1349918 ~ 1357592 (+)
G678948 NA non-coding downstream 45092 1591172 ~ 1593047 (+)
G678945 NA non-coding downstream 160435 1706515 ~ 1707619 (+)
G678942 NA non-coding downstream 181081 1727161 ~ 1733717 (+)
G679064 NA non-coding downstream 189337 1735417 ~ 1735761 (+)
G679069 NA non-coding downstream 219230 1765310 ~ 1765538 (+)
G678637 NA other upstream 386387 1149551 ~ 1155672 (+)
G678751 NA other upstream 475968 1059843 ~ 1066091 (+)
G678440 NA other upstream 1390407 147934 ~ 151652 (+)
G679076 NA other downstream 249090 1795170 ~ 1799433 (+)
G679324 NA other downstream 842787 2388867 ~ 2397360 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other downstream 1143682 2689271 ~ 2693221 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other downstream 2007197 3569165 ~ 3573135 (+)
G680736 NA other downstream 2219611 3765691 ~ 3784441 (+)

Expression


Co-expression Network