G678869


Basic Information

Item Value
gene id G678869
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 1431965 ~ 1432863 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU799547
GAAGAAAGAAAGACATGAACATCTCGGATGACATGGGGGTGAGTAAATTATCAGGAAGTTTTAATTCTGAAGTGAACTAATCCTTTAAACTCAACCAAATTAATTCACCTTTCACTACTTAGTATAAGCAACCAAACCAGTGGACTGTTTTCCCACAGTGCTTTATAACTCGACATCCTACATGTATGGCATTGCAAAAGGAGGTGGGAAATGGAAAAAAAGGAAGACACAAACACACAAAGGCTACGTACAGAACAGATGGGCATCTGTCATTGCACACGATTCCAGATGAATCTGCCATTGCACTTCTGAATACTGCCACATTAACCATTAAAACCCCACCCACAGGGTCTGGATAGATTTCAGTAGTAAAATACATTTAGAATCCTGGCTGCCAGAAAAAGTCATCAATTCTCAAATTGTCAACAATCATAATACATTTCACCTCCAGAGATACTGAACGCAAATTCTCCATCGTGAGCGCGCGGCTCGATAGCCCTTGGCCCGACCGGCTCGTGCCTCCTTCGGCTTTCTGTGACGAGACGAACACACTGAATGGATCGAGTGGGTAACGGTGAAGATGAAGGGCTGATATACCTTTCATAAGGCTTTCTGAGATCATAAAAATAAAAAAAAACACTGGACAAATCGGGGGTTTAACATTCATAAGGCGTCATCCGCACCGACACTGTGGGGTAAAACTCAAAACAAGTCGCATTTCACCCCAAAACTTTGTTTTTCAATTGATTTATATATAATTATTTATTAAATACACATTTCTCATTCTCAATGGTGTTTTAATTATATATTTAATAAAATACCTGCTAAAAATAGGTTTCATGATGCAAGATTTTTTTGTGAACTGTTTCATAAGATTTTTTTCACATTGTGAAATTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU799547 True 899 lncRNA 0.38 1 1431965 1432863

Neighbor

gene id symbol gene type direction distance location
CI01180000_01380859_01385445 NA coding upstream 46182 1380701 ~ 1385783 (+)
CI01180000_01372608_01374455 NA coding upstream 57418 1370761 ~ 1374547 (+)
CI01180000_01196818_01224406 EGLN1B, EGLN1, EGLN1A coding upstream 207050 1196786 ~ 1224915 (+)
CI01180000_00955725_01050852 SIPA1L2 coding upstream 380139 954922 ~ 1051826 (+)
CI01180000_00947514_00949868 NA coding upstream 481059 946421 ~ 950906 (+)
CI01180000_01492241_01493781 NA coding downstream 58808 1491671 ~ 1494446 (+)
CI01180000_01542059_01545609 GGPS1 coding downstream 109196 1542059 ~ 1546080 (+)
CI01180000_01576739_01578505 GNG4 coding downstream 143876 1576739 ~ 1579406 (+)
CI01180000_01747067_01755038 GPR137B coding downstream 314204 1747067 ~ 1755257 (+)
CI01180000_01828938_01830221 DNAJC12 coding downstream 396075 1828938 ~ 1830814 (+)
G678929 NA non-coding upstream 224 1431505 ~ 1431741 (+)
G678868 NA non-coding upstream 998 1429873 ~ 1430967 (+)
G678928 NA non-coding upstream 3626 1428052 ~ 1428339 (+)
G678891 NA non-coding upstream 74373 1349918 ~ 1357592 (+)
G678853 NA non-coding upstream 128237 1288700 ~ 1303728 (+)
G678946 NA non-coding downstream 85490 1518353 ~ 1612547 (+)
G678948 NA non-coding downstream 158309 1591172 ~ 1593047 (+)
G678945 NA non-coding downstream 273652 1706515 ~ 1707619 (+)
G678942 NA non-coding downstream 294298 1727161 ~ 1733717 (+)
G679064 NA non-coding downstream 302554 1735417 ~ 1735761 (+)
G678637 NA other upstream 276293 1149551 ~ 1155672 (+)
G678751 NA other upstream 365874 1059843 ~ 1066091 (+)
G678440 NA other upstream 1280313 147934 ~ 151652 (+)
G679076 NA other downstream 362307 1795170 ~ 1799433 (+)
G679324 NA other downstream 956004 2388867 ~ 2397360 (+)
CI01180000_02690045_02691641 NKX6-2, NKX6-2.L, NKX6.2 other downstream 1256899 2689271 ~ 2693221 (+)
CI01180000_03571292_03571611 GNG2.L, GBG2, GNG2 other downstream 2120414 3569165 ~ 3573135 (+)

Expression


Co-expression Network