XLOC_003898 (comp)


Basic Information

Item Value
gene id XLOC_003898
gene name comp
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6941389 ~ 6974022 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007462
CCTTGGAACGGAATGAAAGGTGTGATGTGTGAAGATCCAgactgcagctgacgtcagaggCGTGTGGTATAAAAGCAgagcagacacagacacagacacacactcagaaCCTCAGATCTGTTGCCCTGCTCAGACGCAGACCCTGAACATGCTGTGGAGTCTCTGCTTCAGCTGTTTCTTCTATCTGCACAGCGCTCTGGTTTCTGCTCAAGGAATATCTAGAGATGGAGAGATTATCAAACAGATTAAAGGCACAAACCAGGAGCTTGCTGAAATCAAAGAACTACTCAAGCAACAGATACAGGAAATAGTTTTCCTGAAGAACACGGTTATGGAGTGTGAAGCCTGTGGCATGAGACCAGCAGATCTGCAGCCTTCATGTGATCCCAACCCCTGCCACTCTGGTGTGGAATGCATTGTTACACCCAACGGCATCAAGTGTGGCGCATGCCCAGCAGGCATGACGGGAGATGGAACTCACTGTGAGGACGTTGACGAGTGTACTGTAATCCCATGTCACATGGGGGTGAGATGCATTAACACATCACCTGGGTTTCGCTGTGGCCCCTGTCCTGCTGGGTACACGGGTCAACAGGTGCAGGGGGTTGGAATCCCCTATGCATCGGCTAATAAACAGGTCTGCACAGACATTAACGAGTGCGCGAATTCAAATGGAGGCTGCGTGGAGAACTCTAACTGCATCAACACACCGGGTTCTTTTCGCTGTGGCCGCTGTAATGCTGGTTTTGTTGGGGATCAGGTCAAAGGGTGCAAAGCCGAGCGGACATGTGGTAACGGTCAGCCCAATCCATGCCATGCCAGTGCAGAATGCATTGTTCACCGTGATGGACAGATTGAGTGTGCATGTGGCGTTGGATGGGCTGGGAATGGATACTTATGTGGAACTGACACCGATATCGATGGCTTCCCTGATGAAAAGTTGGAATGTGTGGAAAGAAACTGTgcaaaggACAACTGCCTCACTGTTCCAAACTCTGGCCAAGAGGATGCCGACAAGGATAACATTGGTGATGCATGCGATGATGATGCTGATGGCGATGGGATTCTCAACATAGAGGACAACTGTGTGCTCGTCCCTAACGTCAATCAGAAGAACACTGATCAGGATGATTATGGAGATGCTTGTGATAACTGCCGTCTGGTGAAAAACAACGACCAGAAGGACACAGATGCTGACGGTCAGGGTGACGAATGCGATGACGACATTGATGGGGACGGAATCAAAAACGATAATGACAACTGCAAAAAGGTGCCAAACCGTGACCAGAAGGATCGAGATGGAGATAATGTCGGCGACGCCTGTGACAGCTGTCCCTACATCCGCAATCCTGATCAGACGGATGTGGATAATGACTTGATTGGTGATCCTTGTGACACCAACAAAGACAGTGATGGAGATGGCCATCAGGACTCTCGAGACAACTGTCCTGCAGTTATCAATAGTTCCCAGCTGGACACGGACAAGGATGGCATCGGAGATGAAtgtgatgacgatgatgacaatgATGGCATTCCCGATCTTCTTCCACCCGGTCCAGACAACTGCCGATTGGTTCCAAACCCGCTACAGGAAGACATTGATGGTGATGGGATTGGAAACGTTTGTGAGAATGACTTTGACAACGACACATTTAGTGACATCATTGACGTTTGTCCTGAGAACGCGGAGGTCACTCTCACTGACTTCAGAACCTATCAGACCGTGGTTTTAGACCCAGAGGGTGATGCACAGATTGATCCAAACTGGGTGGTCCTCAATCAGGGAAGAGAGATTGTTCAGACCATGAACAGTGACCCTGGACTAGCTGTGGGCTATACCGCGTTTAATGGAGTGGACTTCGAGGGAACGTTTCATGTGAACACTGAGACAGATGATGACTATGCAGGGTTTATTTTTGGCTATCAAGACAGCTCAAGCTTCTACGTGGTGATGTGGAAGCAAGTGGAGCAGATTTACTGGCAGGCTAATCCTTTCAGAGCTGTAGCTGAGCCTGGTATCCAGCTGAAGGCAGTGAAATCAGACACAGGACCTGGAGAAAACCTGCGGAACTCACTCTGGCACACAGGTGACTCCACCAACCAGGTGAAACTGTTGTGGAAAGATTCCAGAAATGTTGGCTGGAAAGACAAGACCTCCTACCGCTGGTTCCTGCAGCACAGACCGCAAGAAGGCTACATTAGGGTTCGCTTTTATGAAGGTCAGCAGATGGTGGCAGACACAGGAGTTATTATCGACGCAACCATGAGAGGAGGAAGGCTGGGAGTTTTCTGCTTTTCTCAGGAGAACATAATCTGGGCCAACCTGCGCTACAGATGCAACGATACAATCCCTGAGGATTTTGAGACATTCAGAACCCAGCAAATCCAGCTTTTTTAAAGCCAAACTCATCACCATCaaatttcaagatttttttttttttttacaatcttaatGAATGTTTGTTTGGTGAATTTCGTCATGTGTGACATATTTTatacttcattttttaaatgtattgaacAATACCAGGTTTCCTCAAAAAAACCCAAATGGCAGACAGATGCTGCATTAACACTGAGATCACAGACATCAGGatttaaatatatagatatatgtattttaaaaacacgTACAGAAATACAggtaacaaaatataaatgatataacAAGAAGGCTCTGATATATGCAGCGGAGACATCATGCACATCCATATTTAGTATACTTCTTTTTTCTGAAAATGGAAAAGGACCAGCAAAACGACAAAAAGACGAAATCAGTTCCTTCTACAATCACTTACCACAAATAAGAGACAAAGATGACCACACCAGCACAGCAACTACAGAAGTGGCCCAAAGAAAGCTCTAGACGACCACAAATTATATGTCCTAATATACCGTTAATTCCAATAAAGAGCGAGAGCTGTGCTCGCGTAATGAAAGATCACAAAGATTTGATGCACATTCTGTAATCTAACACTCTCATGAGAGGTTTACCTTTAATACTCATTAAACCTGCTTTAAGTGAAATGTCAGTcgacaaaattaaaaatatatatatatcgtctTTACAGAAATCATAGATGGCACTTAGTTAATGCTAATGCTATGAGTTAAAGAAACAccacttttatttttgcaaacaGGCTgcttttacaactcccctagaatTAAAGAGTTCAGTTTGAGCATTTTTGAATACATTTAGCCAGTCTCTGAGCCTGGCGGGAacacctttagcttagcttagcatagatcattgaatcagattggaccattagcatctcgctcaaatttaaaaaaaagaaatatgctTGAATACTGTTAcacaagctatgtttccatctaaaaatgcTAAAAAGAAATTTGCGGAAAACTGGAATATCGAAtgaaagacgtgcaaataaagcagcgtttccatccaacaaatcaaagcaaacaaaatcgtcacttcttgATAAACTGgtaccaaatatcaacagtacaaactgaatttactgcagtaggagaagctgtgtgaatcttttcttcatttaatgaCTTGCCTCAGAAGGCAATAACACGAAATGAATGCGTGGTGGCGTTCAAAGGTGCGTTtgaagtgtttccatcgtagtttaagcaaatcttttcttattgaattaaagtttatcctactcagttatgttcAAAtgatttttattcacattttcaaaatgtatgcgcatctttgcatttccatcaaccgtttattaatgtgcatattcaAAATCCGCATAAAAATGTGGATGGAAACGTTGCTATTGTGTGCTATTTTATTGgtcgatatggctaggaactataatCTCATTTTTGAgccagatgctaatggtctaatctaattcaattgATTATGCTAAGCAAAGCTAATAGTGATCTTGCCAGACCTGCTGTTCGGCAAATATTGCAGTAATTTAGAGTAAACTAACCACTCAATCAGTCATTTTTGGCCatcaaaaaattttaaatttgataaaaggcaggtaaaatttttaaataaaatataattattataaaaaatctttgatattccatgacttggacaaaaaaatttaattccctgattttaaatgtaaaaaaatgcttcAAATATTACAGTAAATTTTAAGAAAAATCAGGTATTTTCCATCGTAGTTTAAGCGCATCttttcgaataaaaagtttattttactcagttatgcgcatacgtttttcatgtgcattttctacatttttatgcatcttggcatttttatccaccattttttttaatgcgcttatttaaaatctgcataaaaatgggtggatggaaaCTTAGCTATTGTGTGCTATTTTCTAGGtggatatggctaggaactatactctcattctggcatacgaaacaaggaactttgctgccatatCATGGCTTCAGCAGGCGCATATTACAAGTTCCTTGTTCTTATTATGATGGAACTACAGTATAGTTCATAGCCATATTAGCCAAGAAAATaggaacttttcattttctgtcacaCTTAAACCACGGTCACGTTGTACTTTTCAATCCATAGACTTTCATTTATACGCAggcaaatgcgtcagactggaaacgaaAGCTtttgcgacaagtttcgcagtttgctttattgcaaagttcaagcttgatgaactctgacctgcgacaacgcatcacttgactgcatgaaaccaatcaaaattcaaaatatgacctctctgtacagaaattaaaaatttggagcaatcgctcgcttttaaaaCGTCTAAACATCTTGTTTAAGTCCCGCCCCTTTCCGTAGCACTGTGCGACAGAACTtggcatgctcaaactctagtgtgatttaAGTAGATTAGTACTCGATGTAACTTAAGAAGGGTCAAGCTATACATAGTTagattatcaaaactctttttgaaatttttgagcgagatgctaacggtctaatctgattcaattgaatatgctaagctaagctaatagtgctcTTGTCAGACCCACAGAttggctaaatggattcaaaCATAATAAAACTTCAGTGAAgttgtaaaatttgcattttcaaaaaaaaaaaaaacagtttcattAAAAGGAAGGAGTGTTATATCGATCAACGCTAGCTATCCTATGGGTCACTACTactattatgttttgttttttgtttttttattaagaaatacaTCCCGTTTAGTCAACTACGTCCTTATTAGTCTTAATGGTACGGACATGGTAACTAACTGCTCAGCAGTTCTATTAAGGCTTAAAGGGGAATTTACGCTAAAGGGGGTTTGCTCACACAAATAACCAGAACAGTTAACAATTCCAACATACACAGAAGTGCTGTTAGCTAAAACCGCTTCAGAAACGCCCCGAACAGGCAGTTTGGCTGCATGCTAAATCAACAACAGATTATTTGACCAATAAACACGTGCAGTCTGCCCACATCTCCAAATGTTTCGCACGTTAAAGCAACAAACAGACTGAGCCCTTTTTTTTCGGTTTGCATTGGGAAGTCACACATATACGCTTCCAGAATTGTTTTCCCTCTGAATTATCAGTGCAGTACAGAGAACAGTACACAAAAAACGCACCATCACGATAAACCGGGGAAGAAAAACGCATGTACAGTTGAAAAAATACGCATCCTCGTAAGGTAAAACAGTCCAAGTTTCTGAAGCCAAAGATTCTGAAGAAATGCACATACATCAGTATGAAAGCTGCCATATCTTTCTGAcaggatttgaaatgaaaaccCAAGATGCAGTGAGCATGAGGAGGGGGAATGACCCAAACGAACATATTAAACATGCTACAATCGTgaggaaataaatcagaaatGCTACTGTGACCAGAAAGAAAGAGCAACATAACAGATCGGTGCTTTGGTCAAGCATTCTCAAGCAGATCATTTGGTGTAATGCACTAATACGGAGCCCCATAAATATATTCCGTTTCTAAACATGATCACAGACAGTAAAATGACACCACTAGCATTAACTAATACATGCACTGTGTCTGGGGGTCTATACTGTTTTATGTGCAGtgaatctttttttt
>TCONS_00007463
GGAAAGACAAGACCTCCTACCGCTGGTTCCTGCAGCACAGACCGCAAGAAGGCTACATTAGATACAATCCCTGAGGATTTTGAGACATTCAGAACCCAGCAAATCCAGCTTTTTTAAAGCCAAACTCATCACCATCaaatttcaagatttttttttttttttacaatcttaatGAATGTTTGTTTGGTGAATTTCGTCATGTGTGACATATTTTatacttcattttttaaatgtattgaacAATACCAGGTTTCCTCAAAAAAACCCAAATGGCAGACAGATGCTGCATTAACACTGAGATCACAGACATCAGGatttaaatatatagatatatgtattttaaaaacacgTACAGAAATACAggtaacaaaatataaatgatataacAAGAAGGCTCTGATATATGCAGCGGAGACATCATGCACATCCATATTTAGTATACTTCTTTTTTCTGAAAATGGAAAAGGACCAGCAAAACGACAAAAAGACGAAATCAGTTCCTTCTACAATCACTTACCACAAATAAGAGACAAAGATGACCACACCAGCACAGCAACTACAGAAGTGGCCCAAAGAAAGCTCTAGACGACCACAAATTATATGTCCTAATATACCGTTAATTCCAATAAAGAGCGAGAGCTGTGCTCGCGTAATGAAAGATCACAAAGATTTGATGCACATTCTGTAATCTAACACTCTCATGAGAGGTTTACCTTTAATACTCATTAAACCTGCTTTAAGTGAAATGTCAGTcgacaaaattaaaaatatatatatatcgtctTTACAGAAATCATAGATGGCACTTAGTTAATGCTAATGCTATGAGTTAAAGAAACAccacttttatttttgca
>TCONS_00007464
gaAGAGCTCACGATGAGAGAGTTTAGCAGAAAGTTCTGAGGAATAAGACCTCAGGGTTAGCCCTAGGGgtctacatgctggaattcaACCCCACGTCTGTGGATGCAATTACTGGCAAACAGCACTCACTGCATTAAACACACCAACCTGAATATGCAGTGAACATCTATGAGGTGTGATGTGTGAAGATCCAgactgcagctgacgtcagaggCGTGTGGTATAAAAGCAgagcagacacagacacagacacacactcagaaCCTCAGATCTGTTGCCCTGCTCAGACGCAGACCCTGAACATGCTGTGGAGTCTCTGCTTCAGCTGTTTCTTCTATCTGCACAGCGCTCTGGTTTCTGCTCAAGGAATATCTAGAGATGGAGAGATTATCAAACAGATTAAAGGCACAAACCAGGAGCTTGCTGAAATCAAAGAACTACTCAAGCAACAGATACAGGAAATAGTTTTCCTGAAGAACACGGTTATGGAGTGTGAAGCCTGTGGCATGAGACCAGCAGATCTGCAGCCTTCATGTGATCCCAACCCCTGCCACTCTGGTGTGGAATGCATTGTTACACCCAACGGCATCAAGTGTGGCGCATGCCCAGCAGGCATGACGGGAGATGGAACTCACTGTGAGGACGTTGACGAGTGTACTGTAATCCCATGTCACATGGGGGTGAGATGCATTAACACATCACCTGGGTTTCGCTGTGGCCCCTGTCCTGCTGGGTACACGGGTCAACAGGTGCAGGGGGTTGGAATCCCCTATGCATCGGCTAATAAACAGGTCTGCACAGACATTAACGAGTGCGCGAATTCAAATGGAGGCTGCGTGGAGAACTCTAACTGCATCAACACACCGGGTTCTTTTCGCTGTGGCCGCTGTAATGCTGGTTTTGTTGGGGATCAGGTCAAAGGGTGCAAAGCCGAGCGGACATGTGGTAACGGTCAGCCCAATCCATGCCATGCCAGTGCAGAATGCATTGTTCACCGTGATGGACAGATTGAGTGTGCATGTGGCGTTGGATGGGCTGGGAATGGATACTTATGTGGAACTGACACCGATATCGATGGCTTCCCTGATGAAAAGTTGGAATGTGTGGAAAGAAACTGTgcaaaggACAACTGCCTCACTGTTCCAAACTCTGGCCAAGAGGATGCCGACAAGGATAACATTGGTGATGCATGCGATGATGATGCTGATGGCGATGGGATTCTCAACATAGAGGACAACTGTGTGCTCGTCCCTAACGTCAATCAGAAGAACACTGATCAGGATGATTATGGAGATGCTTGTGATAACTGCCGTCTGGTGAAAAACAACGACCAGAAGGACACAGATGCTGACGGTCAGGGTGACGAATGCGATGACGACATTGATGGGGACGGAATCAAAAACGATAATGACAACTGCAAAAAGGTGCCAAACCGTGACCAGAAGGATCGAGATGGAGATAATGTCGGCGACGCCTGTGACAGCTGTCCCTACATCCGCAATCCTGATCAGACGGATGTGGATAATGACTTGATTGGTGATCCTTGTGACACCAACAAAGACAGTGATGGAGATGGCCATCAGGACTCTCGAGACAACTGTCCTGCAGTTATCAATAGTTCCCAGCTGGACACGGACAAGGATGGCATCGGAGATGAAtgtgatgacgatgatgacaatgATGGCATTCCCGATCTTCTTCCACCCGGTCCAGACAACTGCCGATTGGTTCCAAACCCGCTACAGGAAGACATTGATGGTGATGGGATTGGAAACGTTTGTGAGAATGACTTTGACAACGACACATTTAGTGACATCATTGACGTTTGTCCTGAGAACGCGGAGGTCACTCTCACTGACTTCAGAACCTATCAGACCGTGGTTTTAGACCCAGAGGGTGATGCACAGATTGATCCAAACTGGGTGGTCCTCAATCAGGGAAGAGAGATTGTTCAGACCATGAACAGTGACCCTGGACTAGCTGTGGGCTATACCGCGTTTAATGGAGTGGACTTCGAGGGAACGTTTCATGTGAACACTGAGACAGATGATGACTATGCAGGGTTTATTTTTGGCTATCAAGACAGCTCAAGCTTCTACGTGGTGATGTGGAAGCAAGTGGAGCAGATTTACTGGCAGGCTAATCCTTTCAGAGCTGTAGCTGAGCCTGGTATCCAGCTGAAGGCAGTGAAATCAGACACAGGACCTGGAGAAAACCTGCGGAACTCACTCTGGCACACAGGTGACTCCACCAACCAGGTGAAACTGTTGTGGAAAGATTCCAGAAATGTTGGCTGGAAAGACAAGACCTCCTACCGCTGGTTCCTGCAGCACAGACCGCAAGAAGGCTACATTAGGGTTCGCTTTTATGAAGGTCAGCAGATGGTGGCAGACACAGGAGTTATTATCGACGCAACCATGAGAGGAGGAAGGCTGGGAGTTTTCTGCTTTTCTCAGGAGAACATAATCTGGGCCAACCTGCGCTACAGATGCAACGATACAATCCCTGAGGATTTTGAGACATTCAGAACCCAGCAAATCCAGCTTTTTTAAAGCCAAACTCATCACCATCaaatttcaagatttttttttttttttacaatcttaatGAATGTTTGTTTGGTGAA

Function

symbol description
comp Predicted to enable calcium ion binding activity. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Is expressed in several structures, including head mesenchyme; heart primordium; mesoderm; pectoral fin; and somite. Human ortholog(s) of this gene implicated in carpal tunnel syndrome; multiple epiphyseal dysplasia 1; osteochondrodysplasia; and pseudoachondroplasia. Orthologous to human COMP (cartilage oligomeric matrix protein).

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko02020 Two-component system
ko02024 Quorum sensing
ko01001 Protein kinases
ko02022 Two-component system

ZFIN:

id description
ZDB-GENE-060606-1 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Is expressed in several structures, including head mesenchyme; heart primordium; mesoderm; pectoral fin; and somite. Human ortholog(s) of this gene implicated in carpal tunnel syndrome; multiple epiphyseal dysplasia 1; osteochondrodysplasia; and pseudoachondroplasia. Orthologous to human COMP (cartilage oligomeric matrix protein).

Ensembl:

ensembl_id ENSDARG00000098431

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007462 False 6049 mRNA 0.41 19 6941389 6970107
TCONS_00007463 False 857 processed_transcript 0.35 2 6944300 6948018
TCONS_00007464 True 2626 mRNA 0.48 20 6944966 6974022

Neighbor

gene id symbol gene type direction distance location
XLOC_003897 ddx49 coding downstream 60664 6869312 ~ 6880725 (-)
XLOC_003896 lsm4 coding downstream 72915 6859876 ~ 6868474 (-)
XLOC_003895 NA coding downstream 141451 6792546 ~ 6799938 (-)
XLOC_003894 BX936438.1 coding downstream 159313 6780708 ~ 6782076 (-)
XLOC_003893 NA coding downstream 485089 6455034 ~ 6456300 (-)
XLOC_003899 si:ch211-253b8.2 coding upstream 3246 6977268 ~ 6985463 (-)
XLOC_003900 zgc:173548 coding upstream 12567 6986589 ~ 6989598 (-)
XLOC_003901 cdh27 coding upstream 27926 7001948 ~ 7030047 (-)
XLOC_003902 si:ch211-253b8.5 coding upstream 65237 7039259 ~ 7078475 (-)
XLOC_003903 bmp7a coding upstream 133776 7107798 ~ 7147540 (-)
XLOC_003938 BX324177.10 misc upstream 4364782 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 4393572 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 4396433 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 4406882 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 4409811 11383833 ~ 11384130 (-)
XLOC_003891 NA non-coding downstream 510041 6429973 ~ 6431348 (-)
XLOC_003887 NA non-coding downstream 616832 6316654 ~ 6324557 (-)
XLOC_003904 CR925817.2 non-coding upstream 142225 7116247 ~ 7116363 (-)
XLOC_003908 NA non-coding upstream 371778 7345800 ~ 7349497 (-)
XLOC_003912 NA non-coding upstream 799810 7773832 ~ 7796332 (-)
XLOC_003920 CR847563.2 non-coding upstream 1502939 8476961 ~ 8515750 (-)
XLOC_003922 NA non-coding upstream 2009629 8983651 ~ 9523184 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00006116 comp coding CM030142.1 CM030142.1 16001553 ~ 16012344 (-)