G2078986


Basic Information

Item Value
gene id G2078986
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 36746018 ~ 36746802 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2377063
ATCTCCCCCACCCCTAACCCTGTAAtctcctccacccctaaccctacaatcTATAAActcctccacccctaaccctaaaatctACAAACTCcttcacccctaaccctacaatcTACAAACTCCTTCACCCCTAACCATACAATCTATAAActcctccacccctaaccctacaatcTACAAACTCCTCCACCTCTTCACCCCTAACTCTACAATCTCATTCACCCCTAACCCTGTAATctcctccacccctaaccctacaaactcctccacccctaaccctaaccctacaaactcctccacccctaaccctacaatcTACAAActcctccacccctaaccctacaatcTACAAActcctccacccctaaccctacaatcTACAAActcctccacccctaaccctacaaactcattcacccctaaccctacaatcTACAAActcctccacccctaaccctacaatcTACAAACTCCTTCACCCCTAACTCTACAATCTACAGACTCCTCCACCTCTTCACCCCTAACCCTGTAATctcctccaccc
>TU2377064
cccctaaccctaaaatctACAAACTCcttcacccctaaccctacaatcTACAAACTCCTTCACCCCTAACCATACAATCTATAAActcctccacccctaaccctacaatcTATAAActcctccacccctaaccctaaaatctACAAACTCcttcacccctaaccctacaatcTACAAACTCCTTCACCCCTAACCATACAATCTATAAActcctccacccctaaccctacaatcTACAAACTCCTCCACCTCTTCACCCCTAACTCTACAATCTCATTCACCCCTAACCCTGTAATctcctccacccctaaccctacaaactcctccacccctaaccctaaccctacaaactcctccacccctaaccctacaatcTACAAActcctccacccctaaccctacaatcTACAAActcctccacccctaaccctacaatcTACAAActcctccacccctaaccctacaaactcattcacccctaaccctacaatcTACAAActcctccacccctaaccctacaatcTACAAACTCCTTCACCCCTAACTCTACAATCTACAGACTCCTCCACCTCTTCACCCCTAACCCTGTAATctcctccaccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2377063 False 544 lncRNA 0.49 3 36746018 36746802
TU2377064 True 603 lncRNA 0.47 2 36746176 36746802

Neighbor

gene id symbol gene type direction distance location
LOC118936607 LOC106581404 coding upstream 42495 36678773 ~ 36703523 (+)
LOC118944683 NA coding upstream 127292 36610735 ~ 36618726 (+)
LOC110507218 LOC106591049 coding upstream 199521 36453761 ~ 36546497 (+)
LOC110508005 LOC106613226 coding upstream 305309 36438225 ~ 36440709 (+)
naalad2 LOC106581411 coding upstream 365007 36365655 ~ 36381011 (+)
LOC110536894 NA coding downstream 284359 37031161 ~ 37276857 (+)
mre11a mre11a coding downstream 571914 37318716 ~ 37357606 (+)
trnat-agu-151 NA coding downstream 758759 37505561 ~ 37505634 (+)
trnat-agu-152 NA coding downstream 758927 37505729 ~ 37505802 (+)
LOC110508012 LOC106581399 coding downstream 789727 37536529 ~ 37568873 (+)
G2078984 NA non-coding upstream 2473 36742719 ~ 36743545 (+)
G2078960 NA non-coding upstream 38498 36707296 ~ 36707520 (+)
G2078959 NA non-coding upstream 40495 36704985 ~ 36705523 (+)
G2078949 NA non-coding upstream 44067 36701420 ~ 36701951 (+)
G2078948 NA non-coding upstream 47774 36697778 ~ 36698244 (+)
G2078989 NA non-coding downstream 4803 36751605 ~ 36754762 (+)
G2078992 NA non-coding downstream 12460 36759262 ~ 36764082 (+)
G2078994 NA non-coding downstream 15312 36762114 ~ 36766572 (+)
G2078995 NA non-coding downstream 21310 36768112 ~ 36769034 (+)
G2078997 NA non-coding downstream 26793 36773595 ~ 36773882 (+)
G2078493 NA other upstream 443976 36263506 ~ 36302664 (+)
G2078425 NA other upstream 641917 36102874 ~ 36104101 (+)
G2078382 NA other upstream 712019 36033285 ~ 36033999 (+)
G2078296 NA other upstream 813509 35932115 ~ 35932509 (+)
G2079197 NA other downstream 532303 37279105 ~ 37280832 (+)
G2079468 LOC106581367 other downstream 619937 37366739 ~ 37368136 (+)
G2079657 NA other downstream 1069076 37815848 ~ 37819286 (+)
G2080014 NA other downstream 1198130 37944932 ~ 37945151 (+)

Expression


Co-expression Network