RNA id: TU2377063



Basic Information


Item Value
RNA id TU2377063
length 544
lncRNA type intronic
GC content 0.49
exon number 3
gene id G2078986
representative False

Chromosome Information


Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 36746018 ~ 36746802 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATCTCCCCCACCCCTAACCCTGTAAtctcctccacccctaaccctacaatcTATAAActcctccacccctaaccctaaaatctACAAACTCcttcacccctaaccctacaatcTACAAACTCCTTCACCCCTAACCATACAATCTATAAActcctccacccctaaccctacaatcTACAAACTCCTCCACCTCTTCACCCCTAACTCTACAATCTCATTCACCCCTAACCCTGTAATctcctccacccctaaccctacaaactcctccacccctaaccctaaccctacaaactcctccacccctaaccctacaatcTACAAActcctccacccctaaccctacaatcTACAAActcctccacccctaaccctacaatcTACAAActcctccacccctaaccctacaaactcattcacccctaaccctacaatcTACAAActcctccacccctaaccctacaatcTACAAACTCCTTCACCCCTAACTCTACAATCTACAGACTCCTCCACCTCTTCACCCCTAACCCTGTAATctcctccaccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2377060 lncRNA upstream 2473 36742719 ~ 36743545 (+) True G2078984
TU2377033 lncRNA upstream 38498 36707296 ~ 36707520 (+) True G2078960
TU2377032 lncRNA upstream 40495 36704985 ~ 36705523 (+) True G2078959
TU2377017 lncRNA upstream 44067 36701420 ~ 36701951 (+) True G2078949
TU2377016 lncRNA upstream 47774 36697778 ~ 36698244 (+) True G2078948
TU2377067 lncRNA downstream 4803 36751605 ~ 36754762 (+) True G2078989
TU2377072 lncRNA downstream 12460 36759262 ~ 36764082 (+) True G2078992
TU2377074 lncRNA downstream 15312 36762114 ~ 36766572 (+) True G2078994
TU2377075 lncRNA downstream 21310 36768112 ~ 36769034 (+) True G2078995
TU2377078 lncRNA downstream 26793 36773595 ~ 36773882 (+) True G2078997
XM_036965308.1 mRNA upstream 42495 36678773 ~ 36703523 (+) True LOC118936607
XM_036965035.1 mRNA upstream 127292 36610735 ~ 36618726 (+) True LOC118944683
XM_036965056.1 mRNA upstream 199521 36453761 ~ 36546497 (+) False LOC110507218
XM_021588445.2 mRNA upstream 305309 36438225 ~ 36440709 (+) False LOC110508005
XM_036965271.1 mRNA upstream 365007 36365655 ~ 36381011 (+) True naalad2
XM_036964740.1 mRNA downstream 284359 37031161 ~ 37275082 (+) False LOC110536894
XM_036965198.1 mRNA downstream 571914 37318716 ~ 37357606 (+) True mre11a
trnat-agu-151 mRNA downstream 758759 37505561 ~ 37505634 (+) True trnat-agu-151
trnat-agu-152 mRNA downstream 758927 37505729 ~ 37505802 (+) True trnat-agu-152
XM_036965780.1 mRNA downstream 789727 37536529 ~ 37568873 (+) False LOC110508012
TU2376553 other upstream 306664 36438375 ~ 36439354 (+) True LOC110508005
TU2376423 other upstream 443976 36300938 ~ 36302042 (+) False G2078493
TU2377138 other downstream 526684 37273486 ~ 37276857 (+) True LOC110536894
TU2377335 other downstream 532303 37279105 ~ 37280832 (+) True G2079197
TU2377712 other downstream 619937 37366739 ~ 37368136 (+) True G2079468
TU2377942 other downstream 1069076 37815878 ~ 37819286 (+) False G2079657
TU2377944 other downstream 1069076 37815878 ~ 37819286 (+) True G2079657

Expression Profile