AMCG00002891 (lgi1,lgi3,LOC104930305,LOC103387209,LOC106536097)


Basic Information

Item Value
gene id AMCG00002891
gene name lgi1,lgi3,LOC104930305,LOC103387209,LOC106536097
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 5715412 ~ 5730295 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002891
GCCAattgtaataaatcaaatgatcGAGCAGCAACATAGTGCATGGATGACATCCACTAGAGCAATGTTCTCCAGGGACTCAGACGCATCCATTTTTTTCCCAGGGTTTAGCCAATAGCTGTGCAGAAGATAATTTTAAGACACCGTTGATTCTATATGTGTCATGTTGAATTGTATCCGagacaaaacacagaagaaCAGTCATCAATTTGACGGGTGTAGCCTACCAGTGTAACAATTACACGTTTTTGTGTGGATTGGTTACTTACCTGCCTATGCAAAAGTACTGCCTGATTATTggattgctattttttttttttttttttggcagatcCTCATTTCCCAGATATTGTGAGTTGATATCTTTTAATGACATATTTAGatctggttttttttttcccctgtggtAGCCTGCAGATCTCTGCTCTGTGCCTCGCAGAACGAATCGCTGGGATTAACGCCTGGGTGCCGAGGATTGGGATCCGTTGCAGCTGATTTACACGACAGTGgcagaagcagaaaaaataaagacagggACGAAAACTGAAGACAAGGAGGCACTGGCCACCCCAGCCctaaaatacaacatattttcagCAGAGAAACCCGGTTCATGTTCAGGGCTATTCTACGCGCTGGTTGTGACCAGAGTGGATCAAAAGGATGGGATATGCCAACAAAACCTTCAGAAGATACACTCTCTGGCTGTGGATTGCATCTGTGCTGCTTCTTCTGGTAGAGAGCAGGAGAGCCAAGCAACCCAGATGCCCCTCTTCGTGCACTTGCACCAAAGATAATGCCCTGTGTGAAAATATCCGAGCGGTTCCTCGCAGCTTCCCTCCTGATGTCGTTTCTTTATCGTTTGTGAAATCTGGATTCAACGAAATCCCAGAAGGAAGCTTCCTACACACACCAGCATTGCAGCTCCTGCTGTTCACAGCAAACTCCTTTGATACTATAAATGAAGGTGCTTTCCTTGGCCTTCCGCATCTGGAATACCTgtttattgaaaataacaaaatcaagtCCATTTCACCAAATGCTTTTCGAGGACTGAAATCCCTAATACACTTGAGCCTGGCATATAACAACCTGCAGACACTGCCCAGAGATGTTTTCAAAGGAATGGAGGCATTAACAAAagtGGATCTTAGAGGTAATATCTTTAACTGTGACTGCAAGTTGAAGTGGCTTGTCGAGTGGATGTACAGCACCAATGCAACTGTGGATCAGATCTACTGCAACAGCCCACCACTGTAtcaagggaaaaaaattaatgacCTTCAGCCACAATCATTTGACTGCATAACAACAGAATTTGCTGCGTACCAAACCCTAAAATTTGAGTCAATCTCTGTAGATGCATTCTCTTACATAAATGATGAATACGTTGTGTTTGCCCAACCTTTTATTGGAAAGTGCAGCTTTCTGGAATGGGACCATGTGGAAATGGTCTTCCGAAACTATGACAACATAGACAGCACATCAACGGTGATCTGCAAACCACTGGTCATTGATAACCAGCTATTCATCATCGTGGCCCAGCTGTTTGGAGGCTCCCACATTTACAAACGGGACAACTCCGCAAACAAGTTCATCAAAATCCAGGACATCGACATCCTGAAGATAAGGAAACCGAATGACGTTGAAACCTTTCGCATTGAAAATGAGTCCTTCTTCGTCATTGCCGACAGCTCTAAAGCCGGTTCCACCACGGTGTACAAGTGGAACGGCAACGGCTTTTACTCCAACCAGTCCCTCCACCCGTGGTACAGAGATACAGATGTGGAATACCTCGAAATTGCCAACAAACCCCACCTGATCCTGTCAAGCAGCTCGCAGCGGCCTGTCGTATATCAGTGGAACAAGGGCCAGAAACTGTTCGATAGGCGCACAGACATCCCTGAAATGGAGGATGTGTATGCTGTAAAGCACTTCAAAGTGAGGAATGAGCTGTACATTTGCCTAACCAGATTCATTGGGGACTCGAAAGTGATGAAGTGGGACGGGTCCATGTTTCTGGAGGTACAGACAATGCCGTCTCGGGGCTCAATGGTGTTCCAGCCTTTCGCCGTGAACGACTGGCAGTACGCGATCCTGGGCAGCGACTACTCCTTCACTCAAGTCTACCGCTGGGATATGAAGAAAGGGCAGTTTGTTAGTTTTCAAGAGCTGAACATCCAGGCCCCACGGGCGTTCTCCCTGGTTTCCATTGACAAACAGGACGCTTTATCGGTGGACCCTGTGGAAGGAGCAGCGATGCTTCACTTAGATGTGGATGTGGATGACCGTGCAGCCGAGAAGATCCATCTGCAAACCAGCTGTCCTGTCTCGGATGGAGAGGTGGACACCAGGACAGAGGACAGGAGCAAAGGACACCCCGACATCAGGAGGAATGTCTCCGTGCTCCTGTGTTGCAGGGGAGACAATGATCCCGACAACAAGGCTGTGGAGGGGCACACACTTTCGAGAGgtttGGAAAAGAAACCTGCCTGTGCCGGCATCGGTCTGGTTTATTCCTTGCTGGCAtcattgtttttctccattGTAGCTCTTTTGGTAAAGAAAATAGATGGGGTCCATGCTGTTGAAATCAGTGCCATCCGATGCTTTTTCCAAATGCTGTTCGTTCTCCCAGCCATGATTTATTATAAGACTGGATTCTTGGGACCAAGAGATCAGCgaatatttctgtttctgagAGGATTTCTCGGGGCAAATGCAATGATTTTGTTATACTATGCAGTGCAGCAGATGCCCCTTGCAGATGCCACTGTCATCGCGTTCAGTAACCCAGTATTCACTGCTGTGTTGGCTTGGATTTTCCTCAAAGAGAAATGCACCATATGGGACTTCATCTTCACCATTTTCACACTGACGGGAGTGATACTCATTGCAAGGCCGCCGTTTCTTTTCGGTTCCCGTGTCTCTGGGATAGAGGGAGACTACACGAACCACATCAAAGGGACCATCGCTGCCTTCACAGGGGCAGTGGGAGCCGCGTCCACTTTTGTTGTGCTCAGGAAAATGGGAAAAAGCGTGCACTATTACTTGTCGGTGTGGTACTACGCAGTCATAGGTCTGATCGAATGTGTCATAGCCCTGTTCGTTATCAAGGAATGGAATATTCCTTTCTGTGGGTGGGACAGGTGGGTTCTCATGTTGATAGGACTGCTGGGAATCGCAGGACAGACGTTTCTCACGAAAGCACTGCAGCTCGAGAAAGCGGGGCCTGTGGCCTTAATGAGGACTATTGATGTAGTGCTCGCTTTTATACTTCAATTTCTGTTTCTTAACCGAATACCAACATGGTGGAGTCTGGGCGGGGCCTTCTGCGTAATTAGTAGCACTAGTGGAGTGGCTCTTCGGAAATGGTACAGCACCAAAAAATCCTGAGAAATGCCAAGATTTTTTATAGATACATTTtctagtatttattttgattttttttttttttttagataactGAAGTGATATGATTACACTTAATTTTAAGTACTGGCCTAAGACGTAGTGTATTTTTACTCAGGAGTCAAAAAtgtttgtacatttattatgaacctttattttcttaaatgacaattcaaaatatactgCAGCTTAATTGCACTTTAGaagttgtttgtattttacttgTTCTAGTAGACCTATGGCACAAACAGATGAATGGGGGAGTTAATAAAGAAGTATCTGTCTCAAGGCACAGAATACCCCTTGAAAATAAAGGagatattgcattttttaaatgtcttacgTACTTGTCTATATTTCAGCAGTGTTACAGTGGTATTTTTTCCATGTCTATAATTAAGCTGGAATTATGCACTTTCCAGTTTGTGAAAAATTTAGATTACAATGATTGCCTCAGTTGGTCTTTTGGAAAAGACTGATATGcaattttttcagttttctttcatACATTGCAAATACTACAAGTGCCACTTTTGCATATTATACATTGTAAATGATTGTGTCTGTAAGTTAAAAGAAGAAGGCAGATGTCTTTCATTTATTATCCTGCAATACACAATCCAATATATAATTTGTGGCTTGTTCTTTAATGTATGGGAAagaagaaataatgtttttggcATATAGATATGATTTGGAGATCAGACTCAATTCAAATAAGCGGAAATCGAAACAACATTCGTGCACAAGTGGGTTAAGGGTTATAAAGTTAATTTAGTGTGTTtgttgaaaacaatgtaaatccATCCAACTGTTGTATTGCTGtgtattctattattattattattattattattattattattattattattattatctcatCTCATAAGTACTGAGA

Function

symbol description
lgi3 Predicted to be involved in regulation of exocytosis. Predicted to be located in extracellular region. Predicted to be active in synaptic vesicle. Is expressed in head; hindbrain; and spinal cord. Orthologous to human LGI3 (leucine rich repeat LGI family member 3).
lgi1 Enables signaling receptor binding activity. Involved in axon guidance and positive regulation of cell growth. Located in extracellular space. Implicated in familial temporal lobe epilepsy 1.

NR:

description
PREDICTED: leucine-rich glioma-inactivated protein 1

GO:

id name namespace
GO:0048854 brain morphogenesis biological_process

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002891 True 4312 mRNA 0.43 11 5715412 5730295

Neighbor

gene id symbol gene type direction distance location
AMCG00002892 NA coding upstream 25720 5676170 ~ 5689692 (+)
AMCG00002887 NA coding upstream 45996 5667592 ~ 5669416 (+)
AMCG00002886 NA coding upstream 49440 5658437 ~ 5665972 (+)
AMCG00002889 NA coding upstream 60192 5653802 ~ 5655220 (+)
AMCG00002885 NA coding upstream 63989 5643375 ~ 5651423 (+)
AMCG00002896 NA coding downstream 49449 5779744 ~ 5817686 (+)
AMCG00002895 LOC106577152 coding downstream 120233 5850528 ~ 5851871 (+)
AMCG00002897 NA coding downstream 127979 5858274 ~ 5879024 (+)
AMCG00002900 NA coding downstream 178682 5908977 ~ 5913523 (+)
AMCG00002903 NA coding downstream 281533 6011828 ~ 6016245 (+)
G139263 cdk1,LOC106607826,LOC100136692 non-coding upstream 273133 5439777 ~ 5442279 (+)
G139238 NA non-coding upstream 348729 5366435 ~ 5366683 (+)
G139205 NA non-coding upstream 475922 5239350 ~ 5239490 (+)
G139170 NA non-coding upstream 646517 5067472 ~ 5068895 (+)
G139084 cpeb3 non-coding upstream 913168 4798613 ~ 4802244 (+)
G139351 NA non-coding downstream 87757 5818052 ~ 5819125 (+)
G139488 NA non-coding downstream 407826 6138121 ~ 6140671 (+)
G139498 NA non-coding downstream 464316 6194611 ~ 6197030 (+)
G139504 NA non-coding downstream 467975 6198270 ~ 6198502 (+)
G139505 NA non-coding downstream 469064 6199359 ~ 6199856 (+)
G139176 NA other upstream 616668 5096731 ~ 5098744 (+)
G138941 NA other upstream 1685488 4029524 ~ 4029924 (+)
G138888 grid1,LOC106607602 other upstream 2119304 3428689 ~ 3596108 (+)
G138790 bub3,LOC106575478,LOC106577429,LOC107684575 other upstream 2599331 3107458 ~ 3116081 (+)
AMCG00002784 NA other upstream 3220818 2492086 ~ 2494594 (+)
G139492 NA other downstream 417453 6147748 ~ 6153120 (+)
AMCG00002939 ube2d1,ube2d1b,LOC105891213,LOC106607701,LOC103397267,LOC103397347,LOC105010549,LOC107717106,LOC107553913,LOC107733527 other downstream 1336560 7066855 ~ 7073538 (+)
G139720 LOC103376252,LOC104927182,LOC102078543,LOC101474510 other downstream 1646392 7376687 ~ 7379487 (+)
AMCG00002960 NA other downstream 2178957 7909252 ~ 7920908 (+)
G139784 NA other downstream 2192887 7923182 ~ 7926832 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_03087382_03094014 LGI1B coding CI01000047 null 3087080 ~ 3096017 (-)