RNA id: TU218194


Basic Information

Item Value
RNA id TU218194
length 1483
lncRNA type sense_over
GC content 0.37
exon number 3
gene id G147671
representative False

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 18331161 ~ 18408450 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCTCCTCGGAAAACAAAACCACGCATCAAGCGAATTAAATCAATGACCAAAATggatgtatttctttttttcttttattgtatgACTAATGAAGATAATCAAATTCTACAGGGCCATAACATTTAAGAAAGCAAACCTTTACAAAGACGATTTCCCAGTGTACAGTACAGAATAAATCATACTTCGCCTCTGGACTCGTGCACGTTGCTGTCCGCGTCTACGACCGCTTCTGCACATGTTCATCCCTCCGGTTAGCAGTTACTTCAACTTTTGCCAAGcacaaatgtagtttttttttaattacagtatgTGTTGGATTACTTCAGTACAttgcaaaatcaaaaatgaaaccaCTTTCACAATCTGGTATGCATGTGAAATGCTATAATCTCCCATAAAACGAATAAAGTAAAATCCATAGCACAggtcatcaaaaatatattatcagATGCAACAAAACGATCTAAATATATCTATTATTTGTTGTGTAAATAATACACGAACTGAAAGATTCTTTTCAATCTATCtcgttatatatatttttttattgccacATTACCctgtctttaaaatgaattcttCCAGATCTGAACCACCCGTCTTTACATGCTTTCAGAATGACAAACAGTCCCACAGCTAAATAGGGCGAACATTtcataaatgactttttacaatatatattggAAACGACAGTGAGGAGGGGTGAGAGAGAAGCTAATTAATATGGTTCAGAGCTATCCTTGCATAGCACAAAGCTGACTAcggaaatattaaatatgcctATCATGTGCAAAATGCATAACAAGAGGTTggtacaaataaaatgttgcatctTTAGAACGAGTATCCTCATggaaaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatagatatatacacagCATCAATGAACTACCGCATTTACAAAAGTCTGGCTCCAAAGAAATTCACGACTGTTCGTTTGCATACAGTATCACACATATCCCAGAGTAAACTTCCAGTCTTTGCTCAATCTGGCACAAACTCAGCAAACCCTAGATACCGTCAAAAAGGTCTTTGTGAAGATCAAAGAGTGAAATAAAGAGGGGTAACGTGACATTTATCGGCATCGCATAGTCCACAGAATGCGACAGAAAGTTCCTGATCCAGTGGCACACCCCAAAAACATCAAATCGTTTCAAAAGTTTGTGTATGCGTTCgttgtttggaaaaaaacagaaacaaaCGAATGGGACCAGACAGAAGAGTACTGCCAGCTTTTAAGAGCTTCTTATTTCAGGCATTCAGAAACATACCAAGAAGAGCAACTCAAATTGATCAGAATGGTGTGCCTTTTATCACTTCCGTCACAAAAAAGCCCTTACTAACCTATATTGCTACATCAAAGTAAAGTATGATCATGTCGAAGTTCCTCATTTAAGAgaacttgctttttttttttttcttttttttttcttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU217947 lncRNA downstream 263218 18066280 ~ 18067943 (-) True G147520
TU217891 lncRNA downstream 438006 17889232 ~ 17893155 (-) False LOC122326388
TU217892 lncRNA downstream 438006 17889232 ~ 17893155 (-) False LOC122326388
TU217914 lncRNA downstream 448147 17878662 ~ 17883014 (-) True G147496
TU217885 lncRNA downstream 653181 17676923 ~ 17677980 (-) True G147474
TU218274 lncRNA upstream 187635 18596085 ~ 18597397 (-) True G147714
TU218278 lncRNA upstream 195758 18604208 ~ 18605161 (-) True G147718
TU218310 lncRNA upstream 302202 18710652 ~ 18712050 (-) True G147741
TU218327 lncRNA upstream 327572 18736022 ~ 18902037 (-) False G147749
TU218331 lncRNA upstream 327572 18736022 ~ 18902037 (-) True G147749
XM_043221233.1 mRNA downstream 230651 18090879 ~ 18100510 (-) True LOC122326376
XM_043221833.1 mRNA downstream 398504 17930402 ~ 17932657 (-) True LOC122326718
XM_043221248.1 mRNA downstream 401000 17890571 ~ 17930161 (-) True LOC122326388
XM_043221247.1 mRNA downstream 619026 17711255 ~ 17712135 (-) True LOC122326387
XM_043221003.1 mRNA downstream 703317 17591086 ~ 17627844 (-) True stk32a
XM_043221398.1 mRNA upstream 89389 18497839 ~ 18534563 (-) True poglut3
XM_043221392.1 mRNA upstream 126223 18534673 ~ 18549914 (-) True tmprss15
XM_043221406.1 mRNA upstream 141908 18550358 ~ 18553001 (-) False rbm11
XM_043221404.1 mRNA upstream 151902 18560352 ~ 18563249 (-) False si:dkey-71d15.2
XM_043221403.1 mRNA upstream 151903 18560353 ~ 18564964 (-) True si:dkey-71d15.2
TU217960 other downstream 160577 18170080 ~ 18170584 (-) True G147531
TU217955 other downstream 203162 18126229 ~ 18127999 (-) True G147526
TU217615 other downstream 1076789 17153582 ~ 17254372 (-) False fstl4
XR_006247502.1 other downstream 1483940 16839576 ~ 16847221 (-) False frmd7
XR_006247428.1 other downstream 1601131 16720083 ~ 16730030 (-) False LOC122326138
TU218205 other upstream 49924 18458374 ~ 18468851 (-) True G147673
XR_006247482.1 other upstream 141081 18549531 ~ 18552744 (-) True rbm11
TU218295 other upstream 291172 18699622 ~ 18701062 (-) True G147728
TU218309 other upstream 299254 18707704 ~ 18709602 (-) True G147740
TU218335 other upstream 334734 18743184 ~ 18745138 (-) True G147751

Expression Profile