RNA id: XM_043222590.1


Basic Information

Item Value
RNA id XM_043222590.1
length 3898
RNA type mRNA
GC content 0.38
exon number 10
gene id LOC122327317
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 4094391 ~ 4112520 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTTAGATACTCACACAGACACGTTTGACTCGCCTTAACAGACGACAAACATATCTAATATCTTTCAGCATTACAGATACAACCAAGAACATCGAACATAAAAGTACCTAAAATTAATTAGTAAACTAGTTTTTCTGTGCGAGGTCgggttttgagttattttcttctatttattataacaacattatgaataactttattttgttcatgtttttattgatcGTGAAAGGTGTATTTGGTGATGCAGATGTTGTGTCGGTGAATGAAGGAGATTCGGTCACCCTGCACACTGGTCTCACTGAAATACAGAGAAATGATGTGATAGACTGGAGGTTTGGACCTGGAAGTGACCAAATAGCTAGAATCAATAGACCGGCCAACAAAGCAGATACATACGATGGTCCTGATGAGAGATTCAGAGGCAGGCTGGAGCTGGACAATCAGACTGGATCACTGACCATCAGAGACATCATTaccacagactctggactttataAAGTAGACCTCCCCAATGACAAGACTTTAGAATTCAGTCTCAGTGTTACACGAGCGGATGCAGCGGGGCCGATATTAGTGATGAAGCGAGATTCTGTTACTCTAAAAACTGAAGTTCCTGACATTCATAGATATGATGAGATACAGTGGAGTGGACAGCAGAAATATCCTATAGCTGAAATCAACAGAACAGCTGGAATCTTCAGCACATCTGATGGTCCTGaggagagattcagagacagactacAGCTGGACTGTttgactggatctctgaccatcaggaACATTGAAAGCAGCCTCTCTGGACTTTATGAAGTTAACATCAGTGGCAGCAAACACACCATATACAAGACATTCAGTGTCATGGTCAGCGGTGCATTGGAGACAGTGTCAGTGATGGAGGGATATCCAGTCACTCTAAGCTCTGCTCTTACTGAAATACAGGTCAATGATATCATACAGTGGAAGTTCGGAGACACTAGGATAGCTAACGTCAGTCGAACAGCCACACCATTCTATGAAGATGATGCAAGATTTGAAGGTAGACTGAAAGTGAATCATCAGACTGGATCACTGACCATTACCGAAACCAATGAAAAAAACTCTGGACTTTATAAACTACAGATCAGCAGCGGCCGACGCACCATACTCAGGACGATCACGGTCTCTGTCACTGTCACTGAGATGATTGTTCCTGTGATGGAGGGAGAATCTGTCACTCTAGAGTctgatattaaaatacagaGAGGTGATGAAATACAGTGGATATTTGAAGACTGTGTTATAGCTGGAATCAAAGGAAATGACAGAGAGATCTACATAAATAATAGCCCTGATGACAGATTTAAAGAAAGACTGGAGCTAAAAAGGATAACTGGATCCCTGACCATTAAAAATATCAGACCTGAACATGCTGGAATATATAAACTGAAGATCGGAGACAGAAGAGTCTCCTACAAGACGTTCAGTGTTAAAATCATTGaaatgaagacaATATCGGAGTTTGAGGGGAATTATATTACTCTAAGAACCAATGTTAGAATAAACAGAGGTGTTCGGATGCTGTGGCTGTTTGGAGATGAAAACTCGCTCATAGCTAATATCAAAGGAGGCACCGAAGAGATCATTAGATATGATGATGTGAGATTCAGAGGCAGACTGGTGGTGCACGAGAGGACTGGAGATCTGACCATCACAAACATTACAACCGTCCATGCAGGAATCTATAAACTGAAGATCAGCAGTGATGAAGGGtctaaaaaaatgatattcagTGTTTCTGTCAAAGCGAGGAGGGAACAAGTGAAGGAGGGAAcatctgtctttttaaaaacttatgTTGAAATACAGGAGAATGATCAGATCTTGTGGACGTTTGGAGCTGAAAAATCTGTCTTAGTTCAATTCAAAGAAGGGATCACTACATATTTTGATGAGAGATTCAGAGGCAGACTTCAACTGGATAAGAAGACTGGAGATCTGACCATCGCAGACACCAGAGCTGAACACACTGGACTTTATGAGGCTCTGATCTTTAGCAGCAGAGGGACTTCATACAGGAGATACGATGTTGTTATGTATGTGGAGCTTGTGAGTGCTGTTGAGGAAGACACTACCATTCTAAACACTGGTCTTCCCGATATAGAGAAAAACAGTCGCATAGTGTGGATGTTTAGAGATCATGACTCTCCCATAGCTGAAATTAAAAGAGGAACCGGACACACCCCTAAATATGACGATGGTCCTAATGtaagattcagagacagactgaagctggacgagaagactggatctctgaccatcacagACATCACACCTGAACATGCTGGAGATTATCAGCTGCATATTAGCAATGATGAAGGGTCCACAAGCAAGAGATTCTATATTGGAGTGATGAGCAAAACAATGACAGAAGAACAAGAAGATGGAGATAATGACTCAGCGATTGTGGAGATACCACCGTTAAATGAAGGAGTTCCTGATGGAGTGATTGAGTGATTGAGCAGGaggggatttttattttatcaagaTAAGACATGATCATCACTATCAGACACTTTGCCATCatcaataagatttttttctcctcttgaATTCGTCcagtaaaaaatgaataaataataattttcagttTCTCATAGctttgaaatatgcattttaacatgTGTGGACCACAGCAGTAtttctttaatcatttcatGTGATATTTGATATAATAACAAACACCGATACCAgcttaatgttgttgtttgacAGTGTCTCCTGAGCTGAGATCACATGACCTTCTCCTCGTAGAAATAAATCAGATTAAACCACAGTTCAGAAACATCTTTGACCATCAGTGTCACATTCAGTAATAACTTCAGTGTATCTGTTACTTTTAGTAGAAATGAACCAGCTactgaaattatattatttttattaacattttagatttaattttatttgacttgtACACTCTTAACCCAAATTAGCTGACAATACAATATAACTTACAATCTTAAATGGACTATTCAAATTGAGAATTGAATTCTCATAATTGAGACACAACGCAGACATCAAGAAGCAGCATATGAATCTTAGCAATGTTGACAATCAACAGAATGCTTcatgctgcagtgcatgctgggtaacaCCATATTAGAAACTGCCACCATGCACTGCAGTATGACAAAATATTGTCACCACTGTTGAGTATCATATGATGTAGTCAAGTGTTCATGTCAAATAGTCTGAGCCAACTCATTATTTTCTCTCATACCCCTCTTTTgccaattattttaaaatgatcagggTGTCATGTGTTTAATTTCACTTTCTTATCAcagtaatgctaaatttaagTCAACATCTTAAACAAAGACTACATTATGATGCTCATTCATCATGAGTTACAAGCAAAAAACCTAACTAAAGCAAGTTACAATTGTTAAGATGtgtttatatactataaaactgtcaataaaaccaaaacattgaAATGCCATTACATTTcttcacattaataaaaaaatgtcaaagtaTGATATAAATAAGACATCAATAATGTGAACTAATGAATTTCGGTAAAGACTACTATTGTAAACTTAAATAGTCTACTTAAAATTGTATGTTCACCCAACTTAACCTGTTTAGTTTCATCCTGTGCAAAAACTGAAATGGTTTAGTACAACGGGTTTTCCACGCAATTCTCTAGCAATGTCAACTAATTCGGTTTAAGATTATttcttttgcacattttatgataaataattattcCTTAATATGTTATCCAGTTATATGCTTTTGAATTGAGTCTGTTGCACAATGATAACACATAGtgttgtgtctgtttgttttattctcatCTGTTATAACTTTTgtcaaaagtgtgtgtttgaccaATAAACAGTATCTTGTAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220753 lncRNA upstream 13564 4080283 ~ 4080827 (+) True G149230
TU220755 lncRNA upstream 13564 4080410 ~ 4080827 (+) False G149230
TU220748 lncRNA upstream 14176 4079643 ~ 4080215 (+) True G149229
TU220751 lncRNA upstream 14300 4079643 ~ 4080091 (+) False G149229
TU220737 lncRNA upstream 35018 4058119 ~ 4059373 (+) False LOC122327446
TU220779 lncRNA downstream 7011 4119531 ~ 4121608 (+) True G149240
XR_006247663.1 lncRNA downstream 62689 4175209 ~ 4176848 (+) True LOC122327587
TU220767 lncRNA downstream 74845 4187365 ~ 4188839 (+) True G149235
TU220797 lncRNA downstream 78723 4191243 ~ 4213234 (+) True G149249
TU220798 lncRNA downstream 79320 4191840 ~ 4214625 (+) True G149250
XM_043222859.1 mRNA upstream 27899 4064468 ~ 4066492 (+) True LOC122327467
XM_043222819.1 mRNA upstream 36098 4053527 ~ 4058293 (+) True LOC122327446
XM_043222818.1 mRNA upstream 36098 4054053 ~ 4058293 (+) False LOC122327446
XM_043223855.1 mRNA upstream 43952 4048181 ~ 4050439 (+) True LOC122328148
XM_043222807.1 mRNA upstream 101446 3989970 ~ 3992945 (+) False LOC122327441
XM_043222865.1 mRNA downstream 123 4112643 ~ 4116508 (+) True LOC122327474
XM_043222827.1 mRNA downstream 11511 4124031 ~ 4131031 (+) False LOC122327450
XM_043222825.1 mRNA downstream 11514 4124034 ~ 4131031 (+) True LOC122327450
XM_043222829.1 mRNA downstream 11516 4124036 ~ 4131031 (+) False LOC122327450
XM_043222828.1 mRNA downstream 11519 4124039 ~ 4131031 (+) False LOC122327450
TU220637 other upstream 241020 3852063 ~ 3853371 (+) True G149157
TU220657 other upstream 316208 3777580 ~ 3778183 (+) False LOC122328138
TU220366 other upstream 499091 3592661 ~ 3595300 (+) True G148992
TU220368 other upstream 502018 3590639 ~ 3592373 (+) False LOC122327325
TU220429 other upstream 519918 3571093 ~ 3574473 (+) True G149028
TU220805 other downstream 124934 4237454 ~ 4238069 (+) False LOC122327447
XR_006247646.1 other downstream 600342 4712862 ~ 4715952 (+) True LOC122327517
TU221415 other downstream 991009 5103529 ~ 5104436 (+) True G149646
TU221516 other downstream 1340645 5453165 ~ 5455427 (+) False LOC122327428
XR_006247632.1 other downstream 1621888 5734408 ~ 5742638 (+) False LOC122327321

Expression Profile