RNA id: XM_043242156.1


Basic Information

Item Value
RNA id XM_043242156.1
length 5508
RNA type mRNA
GC content 0.51
exon number 16
gene id ubn2a
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 3618243 ~ 3633182 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttacattacatttcctGGGCTATGTAAATGCAAACAATAGAACCTCTTAACATCCAATGCGCGCCTTTAGGAAACACCTTAAAGCACATTCTGGGAAACACTTTCCTCTATTAGTTCCATATCTATGTATTAGTTCAATTTCAAGGGGAAGCCTTTTTTCTAGCGTAACATCTCTAATTGCTCATTAGAGCGTCTGTTGCCTGTAGGCCCGCCTCTGATTGGACGCGCTGCCGTCGTCGGCGCTCTCTGATTGGCCAAGGCGCCCTCTCGGTCGCGCACGCCGTTTCCGGTGTCCGTGTGTGCGCAGACTCAGTTCGCTCGTCTGCGCTCTTTTATTTACTCTCTCTCATCTAAGATGGCTGTTCGGAGCTCCTGAGTCCCCCGAGCGAAGCGACCGAGGATGCTTGCGCCTCCAAAATCAACTTTCACCCGGCCATCCCTTCCCACGCGCGCCCCGTAAGGCGCGGAGGGGACTCTAGCATCAGTACCGCCTCCGAGCGCCCCTTCCATCCGGCGTGAAGCTCTTTAAATCAAGTTGTTTGGCGAAGTCGAGCCCCGCCGCTGAgtgcgagtgagtgagtgagtgtccAAGAGCACTGAACATCCAAATGGCCGAGCCGAGAAAAGTGCAGTTTGTCACCCTGTCGGCCCTGGCCGGCGGTCCGGGCGCGGAGGGCAGGAGACGGCGGCTGGAAGAGGACGGAGTCGCCGAGATGAGTTTTGACAGAGAGGGCAGGATGAAGATGATGGGGACCGGGGTGACGACAGCGGGTGACCGCGGGGGTTTGATCGGGAAGAGAGACGGCGAAGAGCCCAAAGGGAAGACAGTGCGCCTCAACCTGTGTCTGTCCGAGCCTAACGAGCAATGCTCGGCCGAGTTCAACTACAGCGAGCTCATCCAGTCTCAACAGGCCAAGAAGAATCCACCACATTCAAAGTCTTCCCTGGACCCCAGTGACCCCTTCAACGACGATGAGAGAGAACGTCTGCAGGTCGAGGCACTGGCCAAAAAGTTTGAAAGCAAATACTATGATGAGCTTGTCCCAGCCTCCCTGACCACCAAGCTTGGTGGATTCTACATTAATACGGGTACTTTGCAGTTCAGAGCTGCCTCTGAATCTGAGGGAGAGGATGGGGGCAAAGAAGACAAATCCAGGATTAGAGATGGAGAGGAACCACTGATAAAAAGAAGGAAGAAGAAAGATGCAACAAGTATAGAGGAGAAAAAACCCAGGAAGAACAAAGTAGCTAAACAAGGAGTGGCTGGTCTGAGCCTTCATCGCCccgagaagaagaagagaaagaaattaatgaaagaTTCGCTCTGTCTGGCCGCAATGCTCCGTCGTTTCACACGAGAGAAGGAAGAGATGCGGAAACGGGATGCCGGCGTGTCTCGTCCGGGCCCCGGTCTCACCAGCACTCCTAACTCTAACAACCTACTGCCGAACTCCCATCTCCAAGCCAATGCCAACAACAGTGACCTTTCACTAGCCGACCTGACGGCTGACCCCGCCATGATGTCATTGCTTAGTTCGGCCAACGAGAGCGAGCTTCAAGATCTCATGCGTGACCTGGACTTCAGTTTTTTGGACGCAGGGCCCCAGATGCCCCCTTCAGCCAGAGAGAACGGGCAGGTTGGGTTGGGTTCATCATTGGGGCATAAGGTTGCAGCAGGGGGACTGAATCGAGGGCAGGGTGGTCTCATCTCTTTTCCACCTCTCCCTGATGGTCTTCCAGCCCCTTTGATCAAGCGCATAGAAGACCTCCGAGCTGCATCGAGGCAATTTGATCAAGAAGGCAGAAAGAAATTCTTCACTCTGGATATGAATAATATCTTGCTGGATATTGAGCTGCAGGTTCAGGAGCAACCAGCAAACATTCGTTCGGAGGTGTACTCCCATCTGGAAGCCTTTGTGCCCTGTAACAAGGAGGCGCTACTAAAACGACTCAAGAAACTCAGCCTCAACATACAGGATGACCGCCTGCGCACGCCGCTGTTAAAGCTCAAACTCGCCGTGTGCAGCGTGATGCCAGAGCAGATCGCCAGATATAACATGGACTGCATGGCAAAAGCTGCAGCTAAGCAGCAGATAGAAGATGGGGAGAAGAACGGATCGGAGGATGACGATGAAGAGAAACCTGGAAAGAGGGTGATGGGACCAAGGAAGAAGTTCATATGGGATGACAAACTCAGGACTCTGTTGTGTAACCTGGTGCGTGTGAAGCTGAGCTGTTATGAGCTGGAGCAGTGCTCTCTGTCTGTGGAAGACTATCTCAAAGCCTTCATGGAGAATGAAGTCAAGCCGCTCTGGCCCAAAGGCTGGATGCAGACCAGgatgCTTTTTAAGGAGAGTCGTGCTGTACATGGTCACCTCACTGGCCTggGCAAGAAAAGGATTGTTCCAACCCCAAAAGCTGCCAAAATGACTGATGTCAGCTGGACACAGAGACCCGCTCCAGGTGTTGGGTCCACCTCTGCCTCTCCTGCCTTACCCGCCCCAGCATGCAGACCGCCCTCCTCCCCCTCTGAACCCATCTGCCTCTCGGATTCCCTGGACGAGGATCTGGCCGCGAACTCCCTAGACTCCATTTCCCAAGCTCTCGCTCTCCTCAGCAACGCTGCCAAGGGACTGACGCCTAACAATGGCGTTCCCGCCGTTGCTTCTCCCAGCATCCCCGGATCCTCTTCTGGAGTCGGCCACTACTCCTCGCCTATGTCACATTCCACCCTTCCGGCAAAAATGGATTCTTCTGTTATCGCAAAGGCTAATATGAGCACTCTAACTACCTCTCCTTCCCTCACCTCGTCTCCTTCTTCCTCCATGCGAGGCGAGACCTTCGGGATGCTAAAGGACGGCGGGCCTGTGCAGAGACCCTCGGGAGCGCTCTCTCACAGAGCTGGCATTTCAGGAATGAACACGGCGCAGTCTGCAAAACCCCGTCCGCCCCCTACCGCCTCGCCCCTCTTGCCCCCGCAGCAGAGGTCATTTGGGACAATGGGAGTGAAGTTGGTTCAGACTCCGCCCCCTGTTGGACAAATCAAAAACTGCGCTAACAAATCCACTACTGCTGGTTGCGGGCCTGTGGTTTCCCAGCAGCCTCGTATGAACACTCATCCCTCTCAGATGAATCCCAAGAGCCCTCAGCAGTCTCCTCCTCCGACCGCTTCCTCTCCTTCCACTCTACTATCACAGGCCAAGGCTCCCTCGATGCCACACAACCAGTCAAACTTCATCACGCCCATGCAGGCCACGCTCACCAAGTCTTCCCACAGTAGCAGCTCTCCTATTATCAAACTCACGCCGCGACCCCCTGCCCCTACCCCTCCTCCTTCATCCTCACCCTCGCCTTCATCGTCCCCCTCTCTCACCCACCCCAGGCCTCAAATGATCCCCAGCTCACACCAATACAGCCCCAAGAGCCCAACCTTCAGGCCGCCGTTTACCACACAAGGAACCGCAGTGGGATCCGGAGTCAAGTCCGGAGCAGGACAGGTCAGTTACAGTTTTGCCGGTGGACACAAATCCAGTAGTCCGCCCACCGCTGGCGCGAACAACATCAACGCCGTCTCGATGGCCACGCCCCTGTCCGTAGGGTGCCAGGACGGCAGCCCCTCCCCTTCAGCGATCCCAGCCAATCACAGCCAGCGGCAGAGGCCAGTGGGAGGAGTTAGTCAGAGTGCCAAGTCCACAACGAGTCGGGCGTCAGCCATGAGCCTGCCCTCTCCTCCCGTCTCCTCTCATCTGTCACAGGTGTCTTCAGCTTCAGGAAGTAACCTCTTGGGCTCAGTGCCCCCCTCCCTCCCCCTGGGTTTCGGGATGCTCGGGGGTCTAGTGCCTGTTTCTCTACCCTTCCAGTTCCCCTCGCTCCTCAACTTCAACCCTCCAGGCCCTGGAGTTCCTGGCTGCAGCAACATGGGAGCTTCCCCCGCTACCAACTCAGGATACACCTTGGcacagaATCTGTTTAAGAGTCTTCAGCCAGGGTCTCAGGTTGCTCTACCTCCCCACTTGCAGCTTGCTTTCTCAGATGCAAACCAAAGCCAGGGGGGAGACGCGAAGAGGAAGTCCCACTGACCGCCGCAACCAGAATGTAAAGTGGACACCGCTGGCGACGGATGTTTTCAGCTGCTTTGGACGAACACCTACCGCGCTTTCATTCATTAACGACCCTCCTTCAATTAACGTCATTCTGCTTTTAATCGATCAGTGTTCTGGGACGATTGGCGTGAGCCgggtgcattttaatttttgttgtttgtcaaCATGTTTACACAAGACCTTAATCACTGTGGACATAGAGCTAGAGGAGATGAGAGGAGTACGAAACAAAGCAACGTAATTTCTATTTAAGTTAATGTCGGCTGGAAACGTGCAttcctgtgtttattttcttagtAGACTTTTGTTGAACTCCTAAAGGGATGTGATAGTCCAACCGTTTCCTTCTAAGACTGTTAGAATAGTAGCTGTTAATAATACATATgggtaaattatttataatttttcgACAGGGACATATTATGATGTTTAAGTGTATTAGTAGAATAAAATgggtatgtatataaaatatacatttaatattatgtgATCTATTTTCTTTCGAGGTCAGTACATATGATGTTCCTCTCATCTGTGCGTGCAGATGTCTTGCTGTCTTTGGTGCTGCGTATCTCACTGGACCTtgtgaaagaggaaaaaaacaaaacaaaaaaaaaacgttcttttGCAGATGAATGAATCATGTGTGAAAGCTTTTCATAGAGGAAAATTATGAGATTATAGCCTACTTGAACTTTCAGTTTAGTTTTGCTTAATATCAGTACAAGAACTCCCAAGACTGTCAATAAAACGCCTTAGTTTGTAAGTTTGAATAACTATGCAGGACTGTAAATGCTTCAATGCAAGGTAAGCTATTGCTTAGAGCTCCACTTTTGACattagtagtgtgtgtgtgtgtgtgtgagatttggGAGTGTGTTTGATGGGTTTGTCGAGTCCCTTCTGCCCTGTTACCTCACTGGACTGTTCTTCCTTCCACGTCTCTGTTTCATTTCATCCTTCGCAAGCACCTGTTCATTTCAAAATGTCTGGCACTGCTCACCTGCATCTTACGACTGTGTTCAAATGAGAAATGGCACCAAAGATGACAGCGTTCGCTCAGAGTTGACAAGCAACAGGTcaggtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgctcagtGTAACATCCTAAACGTGTGGTCTCTGGTCGTCTCTGTGGATATTGTGATGGACTGACTTTTAAAATCCAattttatatattgcttttattttgttttctaaaaatgctGAAGCGGGTGGGCAAATTTTAACTGATGCTCTCCTcgaaaattcttatttgggtagattatttttgtcttgattCTGGAattaaaatgctgtcttttttttttttgtttgtttagagtACACGctctaaaaattaattcaataaaaaaaacattggcgGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62477 lncRNA downstream 79625 3535499 ~ 3538618 (-) True G42235
TU62506 lncRNA downstream 126982 3490922 ~ 3491261 (-) True G42254
TU62204 lncRNA downstream 328260 3288891 ~ 3289983 (-) True G42080
XR_006251127.1 lncRNA downstream 431686 3185231 ~ 3186557 (-) True LOC122346399
TU62124 lncRNA downstream 577205 3039523 ~ 3041038 (-) True G42042
TU62578 lncRNA upstream 152717 3785899 ~ 3788491 (-) False LOC122346554
TU62579 lncRNA upstream 153655 3786837 ~ 3800450 (-) True LOC122346554
XR_006251143.1 lncRNA upstream 153879 3787061 ~ 3795371 (-) False LOC122346554
TU62622 lncRNA upstream 220078 3853260 ~ 3855532 (-) True G42331
TU62654 lncRNA upstream 323032 3956214 ~ 3957667 (-) True G42354
XM_043242217.1 mRNA downstream 90138 3524889 ~ 3528105 (-) True fkbp11
XM_043242550.1 mRNA downstream 144150 3468854 ~ 3474093 (-) True cldn10a
XM_043242569.1 mRNA downstream 151862 3463041 ~ 3466381 (-) True cldn10e
XM_043241006.1 mRNA downstream 157701 3458019 ~ 3460542 (-) True LOC122346405
XM_043240973.1 mRNA downstream 194077 3393593 ~ 3424166 (-) True hs6st3a
XM_043241124.1 mRNA upstream 711 3633893 ~ 3641176 (-) False ttc26
XM_043241123.1 mRNA upstream 711 3633893 ~ 3641176 (-) False ttc26
XM_043241122.1 mRNA upstream 711 3633893 ~ 3641176 (-) True ttc26
XM_043242910.1 mRNA upstream 9751 3642933 ~ 3645898 (-) False rpsa
XM_043242909.1 mRNA upstream 9751 3642933 ~ 3645898 (-) True rpsa
XR_006251230.1 other downstream 510346 3092540 ~ 3107897 (-) False cep170ab
XR_006251231.1 other downstream 510346 3094790 ~ 3107897 (-) False cep170ab
TU62012 other downstream 774985 2840662 ~ 2843258 (-) True G41955
TU61792 other downstream 1910835 1702833 ~ 1707408 (-) True G41781
TU61311 other downstream 3204690 225710 ~ 413553 (-) True G41443
XR_006251245.1 other upstream 11084 3644266 ~ 3644404 (-) True LOC122347626
TU62651 other upstream 319366 3952548 ~ 3954278 (-) False cep20
TU62650 other upstream 325185 3958367 ~ 3961542 (-) True G42351
unassigned_transcript_1084 other upstream 366429 3999611 ~ 3999692 (-) True trnas-cga_4
XR_006251246.1 other upstream 734979 4368161 ~ 4368244 (-) True LOC122347627

Expression Profile