RNA id: XM_043242569.1


Basic Information

Item Value
RNA id XM_043242569.1
length 1799
RNA type mRNA
GC content 0.42
exon number 5
gene id cldn10e
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 3463041 ~ 3466381 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGAGAGTCATAGATTCACATCAGCACAAAAAAGAATTAGGCTTCGTGTCCAGACTCGGGCGAAACTGATTCTGAAGAAGAACGTTTAAAGGATCGCGAACTGACATGTTGAGAGCGCCGAAGACCGAGAAAGAGATGCTGGAAACGAgaatgttttcttaaaaaagacAGACTACAAAATAATAAGAAGTGTGAGGTAGGTGGTTTAGATAAGCGGGTAAAAGCAAAGATGAAGATCCGTGCAATGCAGATCTGGGGCTTCCTTTTAGCGGTACTGGGGTGGATCTTTGTCGCCTGCTCCATGGCCATGGAGGGCTGGAAGGTCTCCACTATCGGAGGGCAAGGTGGGAACTCCGTCATAAAGGTGGGCTGGTACTGGTCCAGTCTGTGGAGGGCCTGCTTCACGGACTCTGCTTCTACATCCAACTGCTACGACTTCCCCGTTCTGTGGTCCGTTCAAGGTTATCTTCAGATTGTGAGGGCTCTGCTCATGTCTGGGATGGCTGTTGGAGTGCTGGCCTTCATCCTGAGTCTCGTGGGAATGGAATGCACTTACATTGGAGGaaaagacaaagagaagaaCCGATCCATGTTCACAGGAGGCATCTGTCACATAACAAGTGGTATGCTGGCTGCCTCTGGTTATGCACTTTATGCTCAGCATGTTTCTGCAGAGAATTTCAACCCCAGATTTGATGGACTGCAATTTGACTTGGGAACCCCCTTGTTTCTTGGATGGGCCGGATGCGCTTTTCAGATCAGCGGAGGGATTTTCTTCCTAGTATCAGCCTGCAAGATCCGGTCTTTGACACACAGCAGCGAACCAGCACTCAGCGTTCCCGTCGCAGAGGACAATGCCTTGCGTTCCTCTCAAACAAACGTTTCCATCATATCTGAACTCTCCACAAAATCCAACGTCTCAGCCGTATCTGAGCTCTCCTCAAAGTCAGAAACAACAGCTCTGTCAAATGCGCTATCAAAGAGCACGCACATCTCAAGAAGCAGGCGTCCCTCAAGAACCAGACGCTCTGATAAATCGAGAGGCTCTATCAAATCGGACGTGTCGCGATCGGTGAGCTCCTCGCGGTCCTCGAGGATCAGCAGATCACATTTCAACAGCAAGAAAGAGCCTGCTTCTTCTGGAGGCACTACACATCACTTCATCAAGAACTCCTACCTCTGAAACGCTGAGCTTGGATTACTGAATCTGGTTATGATCTGGAAAAGACAAAACGGTGATGTCCAGTGTAGTGCTCTATAAATCACTCTTTTATTTGCTCATAACAAAACAACCCTACACTGGACAGCTGAACAGTGTTACTACAGATCCCAAGGAACTCGGGTTTAGAGTCATTTATTGGTGGATTCATTCTTTGAGAATTATAGATTGCGTATTAATTAAACAGAGCATTACTGCCTATGGATTACTGAAATGCGAGTTAGACCTATTTTTCTTCATGACTTCATTTTATATCCagtaaaattgatttaataaaacaatgaaagatgacaatcattttttttaagatgtcctAAATACATATCTGTGTATTACGAGCCTATATGAATCTGATAATAACATtaacttttgtgttttctgaaatgttatttgaaaatattgttgaaatatgattttttatatatatatatatatatatatatatatatatatatatatatatttaaaaaaacttcctAACAGAAACTTTTCTAAGCTTTTCTTGGGACctaaaagaatatttaataataaatcaattaagtaataatttcctgtatacatttatcaaaacacaattaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62204 lncRNA downstream 173058 3288891 ~ 3289983 (-) True G42080
XR_006251127.1 lncRNA downstream 276484 3185231 ~ 3186557 (-) True LOC122346399
TU62124 lncRNA downstream 422003 3039523 ~ 3041038 (-) True G42042
TU62122 lncRNA downstream 422003 3040345 ~ 3041038 (-) False G42042
TU62127 lncRNA downstream 427459 3035193 ~ 3035582 (-) True G42044
TU62506 lncRNA upstream 24541 3490922 ~ 3491261 (-) True G42254
TU62477 lncRNA upstream 69118 3535499 ~ 3538618 (-) True G42235
TU62578 lncRNA upstream 319518 3785899 ~ 3788491 (-) False LOC122346554
TU62579 lncRNA upstream 320456 3786837 ~ 3800450 (-) True LOC122346554
XR_006251143.1 lncRNA upstream 320680 3787061 ~ 3795371 (-) False LOC122346554
XM_043241006.1 mRNA downstream 2499 3458019 ~ 3460542 (-) True LOC122346405
XM_043240973.1 mRNA downstream 38875 3393593 ~ 3424166 (-) True hs6st3a
XM_043242835.1 mRNA downstream 84591 3373272 ~ 3378450 (-) True atg3
XM_043242166.1 mRNA downstream 94608 3356451 ~ 3368433 (-) True nhej1
XM_043242167.1 mRNA downstream 94609 3356451 ~ 3368432 (-) False nhej1
XM_043242550.1 mRNA upstream 2473 3468854 ~ 3474093 (-) True cldn10a
XM_043242217.1 mRNA upstream 58508 3524889 ~ 3528105 (-) True fkbp11
XM_043242156.1 mRNA upstream 151862 3618243 ~ 3633182 (-) False ubn2a
XM_043242154.1 mRNA upstream 151862 3618243 ~ 3633180 (-) True ubn2a
XM_043242155.1 mRNA upstream 151862 3618243 ~ 3633077 (-) False ubn2a
XR_006251230.1 other downstream 355144 3092540 ~ 3107897 (-) False cep170ab
XR_006251231.1 other downstream 355144 3094790 ~ 3107897 (-) False cep170ab
TU62012 other downstream 619783 2840662 ~ 2843258 (-) True G41955
TU61792 other downstream 1755633 1702833 ~ 1707408 (-) True G41781
TU61311 other downstream 3049488 225710 ~ 413553 (-) True G41443
XR_006251245.1 other upstream 177885 3644266 ~ 3644404 (-) True LOC122347626
TU62651 other upstream 486167 3952548 ~ 3954278 (-) False cep20
TU62650 other upstream 491986 3958367 ~ 3961542 (-) True G42351
unassigned_transcript_1084 other upstream 533230 3999611 ~ 3999692 (-) True trnas-cga_4
XR_006251246.1 other upstream 901780 4368161 ~ 4368244 (-) True LOC122347627

Expression Profile