Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_043241006.1 |
| length | 843 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 5 |
| gene id | LOC122346405 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_056704.1 |
| NCBI id | CM032073.1 |
| chromosome length | 27473687 |
| location | 3458019 ~ 3460542 (-) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005923 | bicellular tight junction | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005198 | structural molecule activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU62204 | lncRNA | downstream | 168036 | 3288891 ~ 3289983 (-) | True | G42080 |
| XR_006251127.1 | lncRNA | downstream | 271462 | 3185231 ~ 3186557 (-) | True | LOC122346399 |
| TU62124 | lncRNA | downstream | 416981 | 3039523 ~ 3041038 (-) | True | G42042 |
| TU62122 | lncRNA | downstream | 416981 | 3040345 ~ 3041038 (-) | False | G42042 |
| TU62127 | lncRNA | downstream | 422437 | 3035193 ~ 3035582 (-) | True | G42044 |
| TU62506 | lncRNA | upstream | 30380 | 3490922 ~ 3491261 (-) | True | G42254 |
| TU62477 | lncRNA | upstream | 74957 | 3535499 ~ 3538618 (-) | True | G42235 |
| TU62578 | lncRNA | upstream | 325357 | 3785899 ~ 3788491 (-) | False | LOC122346554 |
| TU62579 | lncRNA | upstream | 326295 | 3786837 ~ 3800450 (-) | True | LOC122346554 |
| XR_006251143.1 | lncRNA | upstream | 326519 | 3787061 ~ 3795371 (-) | False | LOC122346554 |
| XM_043240973.1 | mRNA | downstream | 33853 | 3393593 ~ 3424166 (-) | True | hs6st3a |
| XM_043242835.1 | mRNA | downstream | 79569 | 3373272 ~ 3378450 (-) | True | atg3 |
| XM_043242166.1 | mRNA | downstream | 89586 | 3356451 ~ 3368433 (-) | True | nhej1 |
| XM_043242167.1 | mRNA | downstream | 89587 | 3356451 ~ 3368432 (-) | False | nhej1 |
| XM_043242165.1 | mRNA | downstream | 103033 | 3343902 ~ 3354986 (-) | True | ihhb |
| XM_043242569.1 | mRNA | upstream | 2499 | 3463041 ~ 3466381 (-) | True | cldn10e |
| XM_043242550.1 | mRNA | upstream | 8312 | 3468854 ~ 3474093 (-) | True | cldn10a |
| XM_043242217.1 | mRNA | upstream | 64347 | 3524889 ~ 3528105 (-) | True | fkbp11 |
| XM_043242156.1 | mRNA | upstream | 157701 | 3618243 ~ 3633182 (-) | False | ubn2a |
| XM_043242154.1 | mRNA | upstream | 157701 | 3618243 ~ 3633180 (-) | True | ubn2a |
| XR_006251230.1 | other | downstream | 350122 | 3092540 ~ 3107897 (-) | False | cep170ab |
| XR_006251231.1 | other | downstream | 350122 | 3094790 ~ 3107897 (-) | False | cep170ab |
| TU62012 | other | downstream | 614761 | 2840662 ~ 2843258 (-) | True | G41955 |
| TU61792 | other | downstream | 1750611 | 1702833 ~ 1707408 (-) | True | G41781 |
| TU61311 | other | downstream | 3044466 | 225710 ~ 413553 (-) | True | G41443 |
| XR_006251245.1 | other | upstream | 183724 | 3644266 ~ 3644404 (-) | True | LOC122347626 |
| TU62651 | other | upstream | 492006 | 3952548 ~ 3954278 (-) | False | cep20 |
| TU62650 | other | upstream | 497825 | 3958367 ~ 3961542 (-) | True | G42351 |
| unassigned_transcript_1084 | other | upstream | 539069 | 3999611 ~ 3999692 (-) | True | trnas-cga_4 |
| XR_006251246.1 | other | upstream | 907619 | 4368161 ~ 4368244 (-) | True | LOC122347627 |
