RNA id: XM_043242167.1


Basic Information

Item Value
RNA id XM_043242167.1
length 1862
RNA type mRNA
GC content 0.45
exon number 8
gene id nhej1
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 3356451 ~ 3368433 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCATcgtttaaacaatattaaagctctttttaaaatcttgtcAATGTTTTGCTTATGAATGTCCCAATAAAGACGCTgcataattaatgttttgttttgtaacttCAATAACCGAGGAACTCTTCCTCGCGGAACGTTTTATTCCTGGTTTGTTTTTACGGGGAATGTGCGTCAGTCGAAACGGCCCCTTGTTGGTGACTAAGATACTGACAGTGTAAAGTGTGCTGCGGGGCGATGGAAAGAGGCCTGCTTGCTCTCCCATGGGTGCCGGTGAATATTGGTGGTTCTGATCTACTGGCCAAAGCCTGGTTCGGTGACGCACAGTACCGGGTTCTGTTGAGTGACCTGAACACTGTGTGGGAAGAAGAAATGAGCACAGATGACATCCAGAGTCGCGCACAGGATCTGAATAAGCGCCTGAGAGCTCCTACGCAGGCTTTTTTCTCCCATCTATGTTCTGTGGCGCGGCCTTGTTTCTCTAGTCAAGATGACGATCGGTTTTCTACTGCACATGTTACTCTTGAACAGCATGGTGACAATCTAACGATCAAACTCAAAAGTGAGCTGGCTGGGTTGCCTTTCTACTGGGAGTTTCTCTGCACCGCAACTCCTGTTGGCGTGGTGTGCAGTCATCTGGTGCGCCCCCTGCTGGCAGTGAGTAGAGTCCTGCAGCGCCAAGTGGAGGATCTAACTGCCCTTCTGGCTCGGAAGGATGCAGAGATACAGGACTATCAGGAGAACGGAGCTGTCCTAAGTAGAGCCAGACTACAGACAGAGCCGTTTGAGGTGCACAGGTACAGAGAAAACCTCTTCACACAGATTATTCCACAGATGGGTGTGACGCTGGACAGTTTGAGTTTTGACTCAGAGTTGCAGACACTGTACATGGCCGTGAGCTCGGGGAAAACGGGTCAGAAACGCAAACATTCTCCTGACAGCAGCCCTGTGGCAGAAGACAACCACGTCTCTCAACATCACCAACACATCTCTGATGTCCCCACAGGTGCTAGTTCTTCACTGGCTTCTCAAGAACAGAATGATATCAAAGCATCATCAGGAAGACCTCAGGTGGCTGACAGTAAACAGGCCGTCCCGTTACCATCAGCTGCTGCTTCTGAGGAACGTTCCACCTCACGGccgaagaagaagaaagcagTCGGGCTTTTTCGGTGACAGTTCATCTTTCTGCATCAGAACAGTGCACATATGGACCCTTTTAATTTAAGAatgcattataaacatttttattcattttaggttggatttttaaatgattatggGGATTTTATTGTTGTCCATTTTAacgttttaaaattaataaataaaatatagcgtTTCTCAATACATGTTCTCGTTGGTAGGGCTGACGCACCCCAACTGGCAGCATGGAAAAAAAGTACAGATGCTCAGAGTATGCATAAGATGAGGTGCAAATACTACTTTTCCGCTTAGAAGTTGAGATGCACAggtttttattagtgttttggGAGGATAACAATGTGCTTTACAGGGTTGCTACAACCAGTGCTTCTAAGAAAGAAGCCAAGACGAGAAGGTCACTGAACTTGGCAAAGTTTGTAAGGTTTGTGGCGTTAGATATACAGAGTTTAGTTTGAGGCCCTCACTAGCAAGTAAATGTGATATGCTTGAGCACAAATGTATGTTCCGCTTCGTGTTCCGTAAAATCATCAGGACTTTTGAACGGACGGAAATTCTGGCCACAAACCCAACACGCATATTCCATTAATTTCTTTGGTTTTGGCTTTGCCTTTGTTAGAATGAGCTACCATTTTGTTTCTTGTCGTACTATTATCCCAGTATTGTTAATTGGTCCATCTATAAACTTAACAGAAAAAGTGAA

Function

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0006310 DNA recombination biological_process
GO:0005634 nucleus cellular_component
GO:0070419 nonhomologous end joining complex cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62204 lncRNA downstream 66468 3288891 ~ 3289983 (-) True G42080
XR_006251127.1 lncRNA downstream 169894 3185231 ~ 3186557 (-) True LOC122346399
TU62124 lncRNA downstream 315413 3039523 ~ 3041038 (-) True G42042
TU62122 lncRNA downstream 315413 3040345 ~ 3041038 (-) False G42042
TU62127 lncRNA downstream 320869 3035193 ~ 3035582 (-) True G42044
TU62506 lncRNA upstream 122490 3490922 ~ 3491261 (-) True G42254
TU62477 lncRNA upstream 167067 3535499 ~ 3538618 (-) True G42235
TU62578 lncRNA upstream 417467 3785899 ~ 3788491 (-) False LOC122346554
TU62579 lncRNA upstream 418405 3786837 ~ 3800450 (-) True LOC122346554
XR_006251143.1 lncRNA upstream 418629 3787061 ~ 3795371 (-) False LOC122346554
XM_043242165.1 mRNA downstream 1465 3343902 ~ 3354986 (-) True ihhb
XM_043242535.1 mRNA downstream 13358 3321888 ~ 3343093 (-) True bin1b
XM_043242534.1 mRNA downstream 13362 3321888 ~ 3343089 (-) False bin1b
XM_043242533.1 mRNA downstream 40172 3313015 ~ 3316279 (-) True tuba8l4
XM_043242293.1 mRNA downstream 126328 3214311 ~ 3230123 (-) True ccdc85al
XM_043242835.1 mRNA upstream 4840 3373272 ~ 3378450 (-) True atg3
XM_043240973.1 mRNA upstream 25161 3393593 ~ 3424166 (-) True hs6st3a
XM_043241006.1 mRNA upstream 89587 3458019 ~ 3460542 (-) True LOC122346405
XM_043242569.1 mRNA upstream 94609 3463041 ~ 3466381 (-) True cldn10e
XM_043242550.1 mRNA upstream 100422 3468854 ~ 3474093 (-) True cldn10a
XR_006251230.1 other downstream 248554 3092540 ~ 3107897 (-) False cep170ab
XR_006251231.1 other downstream 248554 3094790 ~ 3107897 (-) False cep170ab
TU62012 other downstream 513193 2840662 ~ 2843258 (-) True G41955
TU61792 other downstream 1649043 1702833 ~ 1707408 (-) True G41781
TU61311 other downstream 2942898 225710 ~ 413553 (-) True G41443
XR_006251245.1 other upstream 275834 3644266 ~ 3644404 (-) True LOC122347626
TU62651 other upstream 584116 3952548 ~ 3954278 (-) False cep20
TU62650 other upstream 589935 3958367 ~ 3961542 (-) True G42351
unassigned_transcript_1084 other upstream 631179 3999611 ~ 3999692 (-) True trnas-cga_4
XR_006251246.1 other upstream 999729 4368161 ~ 4368244 (-) True LOC122347627

Expression Profile