RNA id: XM_043247633.1


Basic Information

Item Value
RNA id XM_043247633.1
length 4055
RNA type mRNA
GC content 0.47
exon number 15
gene id fnbp1l
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 7554832 ~ 7594351 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGGCAGAGGCGCATTGTGTGTCGGAAATGGGAAAACCCTGAACCGTGTGCTTGTCGCTGCTGGCTTCACTGGAGTATAGAGAGTTACACGACGGCAGAGAGAGGGACGAACAAGCAGCCCTGGAGTTTTAAGCGGCGAAGACGTTAGTTCTTGGAGTTTTTTCGCCATGAGCTGGGGAACGGATCTTTGGGACCAGTTCGACAATCTCGACAAACACACGCAGTGGGGCATCGACTTCCTAGAACGCTATGCAAAGTTTGTCAAGGAACGTCTGGAGATTGAGCAGGCCTATGCAAAGCAGCTACGGAGTTTGGTTAAGAAATACTGCCCTAAGCGCTCCAAAGATGATGAGCCCAGGTTCACATCCTGTTTGTCATTCTACTCCATACTGAATGAGTTGAATGATTACGCGGGTCAGCGAGAGGTTGTTGCTGAGGAGATGGGGCACAAAGTGTATGGGGAGCTGATGAGGTACTCACAGGACCTGAAGGGGGAAAGAAAACATCATCTCCAGGAAGGACGGAAGGCCCAACAGTATCTAGACCAGTGCTGGAAACACATGGACAACAGTAAAAAGAAGTTTGAACGGGAATGCAAAGAGGCAGAGAAATCACAGCTCATCTACGAAAGACTAGACAACGACATCAACGCCACAAAGTCAGAGGTGGAAAAGGCAAAGTCCCAGCTGTATTTGAGACAACACATGGCGGAGGAGAGCAAGAACGAATATGCAGCCCAATTGCAAAACTTCAACGCTGAACAGTGGAAGCATTTCAACGTGGCTATCCCTCAGATATTTAAGAATCTGCAAGACATGGATGAACGACGGACGGTCAAGCTTGGTGAGATGTACCGGAGTTTTGCTGAGGTGGAAAGAAGAGTCGTTCCCATTATCTCAAAATGCTTGGAGGGCATGGTTACCGCCGCTAAAAATGTGGACGAGCGTAGAGATTCTGGGATTGTAGTGGAGTCATTCAAGTCAGGGTTTGAACCCCCGGGTGATTTCCCCTTTGAGGACTTCAGTCAGAACATCCAGCGAACAGGATCAGATGGCACTATTGGGACCCCCAAGACGGAAGGAAGCAAACCGGACCCCAAACACGCTGTTGGCAGGACCAAAAACAAACTCTGGCTTTTTGGGAAGAAACCGAAGCTTCCCCCATCCATCCCTCCCCCTTCCCTCCCGAGTTTTCCCTCTGGCCACTTCCAGCCTCCTAAATTTTCTACAGAGCGGATAGCTAACCATCTATCCGAAATGAGAAATGCAAAATCTAAGATCCCATCCTTCCGAGCTGTGAAAAGAGGGGCACCAACACTAGAGGATCTCAGCCACCTTCCTCCTGAACAGAGACGCAAAAAACTTCAACAGAGGATTGATGAGCTGAATAAAGAACTGCAGAAGGAAATGGACCAAAGAGATGCTCTTAACAAAATGAAGGATGTTTATGAGAAGAATCCTCAGATGGGAGATCCTGGAAGTCTTCAGCCCAAGATTTCAGAGACCATATGCAACATGGAGAAACTCCGCTCTGAGATCCATAAAAATGAGAGTTGGCTATCAGAGGTCGAAGGAAAGCACGGATCTCGTAGTGAACGACGTCCCAGTGCAGATGTGAACCACCACACACCACACGGCAGAGAGAGccCTGAAGGCAGTTACACAGATGATCACAGTCAGGAGCATCGGACTCCACCGCAGCCAGACCCACATGAATTTGATGACGAGTTCGACGACGACGATCCTCTCCCCGCCATTGGCCACTGCAAAGCTCTCTATTCTTttgatgGTTCTAACGAAGGCACGTTGGTAATGAACGAGAACGAGGTGCTGTACGTCATCGAGGAAGATAAAGGCGACGGATGGACGCGGGTTCGGAAGCAAGGCGGAGAGGAGGGCTACGTCCCCACGTCTTATGTGGAGAtcacactggagaaaaacagcaaaGGTGCGGTCACCTACATATGACATCACCCACGGCAGCACCGCCTAGTTATGACATCACACATGGGGCAGCGTGTGTCAGAGTTACCGTGACTCATCAAGTGCAGCTCGGCTGACTGCCATATGCCTTTGTTCACCATGTGAGCTCAaggacaaacacagacacactggCTAAAGTGACTGTTTCCTCTGCACTGTGACTTTGCCGCAGCAGATACAACCGTAGACCTGTAGAGATTTGTAtagcattttattgcatttttaattagtgCTTGACGCactgtttttaatcagttttatatATAGCGCCGGAGCAAACCTGAACAAAACGCGTTGGCTCCTTTTCAAACGTCTGTCTGAGCGGTGATTTGCTCGAACAACTGTCTCACTCCAATCATCTGCTCttatgtgtttttgcatgttgaaaagtaaagtaaaatcatTGTTTCTGCAGTCGACGTTTCAGTTCATGCAGTTCTTCCAGCTTTCTCCAAAGTGTTATTTCCTTGCCGCCAAATTTTCCTCATTGCAGCAACAAACCGGTTTAACTTCAGCTTTTCCTGCGAGTGCTGctcttttgtttaaatttgaaGTGGCAcgggtttctttttttaatttgcgtCCTGGGATCAaaagcatataataaatatgatccAAGATCGACTTGGGCTGGCTCAGTGGCGCCCTCTATCTTGTTTCCTCTGTCGCTGATCAATCTTCGTTGTCGGTGGGCCTGTCAATGACTCTGtcctctcttttctctgtgGCTACAGGTTCCTGATTGGATGAGTGGGGTTCTGTGGTGTTTGGTGGCCGGGACTCACTGCTGTGGGTCTGTTAGTGGGGCGGTGGGGCGAATTTTAAACCGAGATCGTGCTGGGGCAAGGTTGCATGTTTGCATGCTGTTTGTGTCATGCCCATTAACATCATTCCATTGCAGCAGACGTTCCAGGGAATATCTGAGAGGGCATGGGAGAACGGGGGAAGCCGCTCTCGTGCAATAACGGAGAAGTTAATAAGAGAGGTTGCCTGGCACTAACATATTCAGCGGAGCGTGTGTCTGTTTATACCGTCATCTCATCATAACATGCACCTGCATGATCCAGCAGCCTTTCATTCCCCATTCCGTTCTGACCAGTTGACCCCTTAATAGGATTTAACCACTTCTTATCCCAACCACTTTTTTTTGCGTCTCTTTCTCCGTTGACTCTTCTCTTCCTCATTGACATTCCATGTTAACCGTGATGTCTCAAAAGCATGACCAATCAGATTAGAGGAAGCATGGTGCTTGGTAGCCAATGCGACAGTTCCCACAGCAACATCCACCCACTGGCCCCGCCCGCCCCCTTTGCCATAGTCTGGAGGCTGGAAGGAACCGGATGCAGTTCTGCATTTGACCAGCAGGGTCCCCTGCAACACCATACAAAACGAGCAGAGAACCGCCAGCGAGGACCTCGGAACACCAACCATCATCTCTGCCTTAATTACAGGCCTCTGTGTGGAAACAGGGGTCTATCTGACCCTCAGTGCCCAAAAAACTGCTTGTTTTTGGGCTGCCAGCTCTCTGCGGTGCTTTCTCCATTTCTCGCCCAGCTCCGTGTCACATGTGCTAAAAGAACAAGCTCACTGCCTCCTAAACAAAGGACCACACGTCTCCAGAATCCGATCTCAAGTGCGTGTATTTGTGAATGTGATTCTTACATATAAAATTGTGTATGCATATTGATGCATATGTATATACCtagttagtttttattattaatctgtATGTATTAACATCTTTATTTcagaatgaatgtttttttttttgttttttttaaccgaACGAATGACTTTCAGGCTTTGCTTTAAAGAACCGTGCTGTAATCGCTTTGTAACCAGTTCTTCTTCCTGTCTGAACTCTGTTCTCAATAGGACCCTGGTCTTAACCGATGCACTTTTTACCCCGTTGCATTTGAATTGGAATTTTAGGGAGTGAATGATGTCGGATTTGAATGCTTCcttttgtgtgaatgtgttgtaCAGTAAGACAACGTTGACCACTATATACTGGGGTTTGTGTTGGAGCAAGAGCAACTGAGAAATAAATACCTATGTCTGTTTGTCTCATT

Function

GO: NA

KEGG:

id description
K20121 FNBP1; formin-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251634.1 lncRNA upstream 42396 7511553 ~ 7512436 (+) True LOC122350889
XR_006251633.1 lncRNA upstream 42398 7511553 ~ 7512434 (+) False LOC122350889
TU91560 lncRNA upstream 42404 7511083 ~ 7512428 (+) True G61841
XR_006251636.1 lncRNA upstream 43298 7511034 ~ 7511534 (+) True LOC122350892
XR_006251631.1 lncRNA upstream 53345 7497374 ~ 7501487 (+) True LOC122350887
TU91655 lncRNA downstream 6392 7600743 ~ 7604022 (+) True G61902
TU91675 lncRNA downstream 155357 7749708 ~ 7756124 (+) True G61916
XR_006251640.1 lncRNA downstream 681224 8275575 ~ 8280335 (+) True LOC122350903
TU91814 lncRNA downstream 689409 8283760 ~ 8283984 (+) True G62002
XR_006251625.1 lncRNA downstream 757680 8352031 ~ 8354451 (+) True LOC122350828
XM_043247623.1 mRNA upstream 907 7529706 ~ 7553925 (+) True abl2
XM_043247624.1 mRNA upstream 907 7542462 ~ 7553925 (+) False abl2
XM_043247637.1 mRNA upstream 25746 7520726 ~ 7529086 (+) False soat1
XM_043247645.1 mRNA upstream 38228 7512712 ~ 7516604 (+) True LOC122350878
XM_043247646.1 mRNA upstream 38422 7512712 ~ 7516410 (+) False LOC122350878
XM_043247641.1 mRNA downstream 61329 7655680 ~ 7658656 (+) True paox1
XM_043247651.1 mRNA downstream 64679 7659030 ~ 7660199 (+) True mrpl55
XM_043247632.1 mRNA downstream 66196 7660547 ~ 7666789 (+) True slc5a9
XM_043247631.1 mRNA downstream 66197 7660548 ~ 7666786 (+) False slc5a9
XM_043247647.1 mRNA downstream 72742 7667093 ~ 7671807 (+) True gclm
TU91548 other upstream 25764 7524635 ~ 7529068 (+) False soat1
TU91547 other upstream 30936 7306119 ~ 7523896 (+) True soat1
TU91367 other upstream 705121 6848481 ~ 6849711 (+) True G61713
TU91369 other upstream 705121 6848481 ~ 6849711 (+) False G61713
TU91312 other upstream 788289 6756105 ~ 6766543 (+) False G61678
TU92500 other downstream 2110130 9704481 ~ 9705639 (+) True G62483
TU92869 other downstream 2754608 10348959 ~ 10353113 (+) False col2a1a
TU92796 other downstream 2837451 10431802 ~ 10440496 (+) False G62692
TU92799 other downstream 2874523 10468874 ~ 10478799 (+) True G62692
XR_006251600.1 other downstream 3598373 11192724 ~ 11197803 (+) False LOC122350428

Expression Profile