RNA id: TU80621


Basic Information

Item Value
RNA id TU80621
length 1706
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G59809
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 48520483 ~ 48522209 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caaggctgcatctgtgagctgatgtatcagaaccgagtcgctacactttcctccaagcgcgctgtgatgctattcagCAATGCTATagcaatcagcagcagtttgaaaagaggtggtgattcctgaggaggcatgtgctagtcttcacagtcctgatgttgtggcatcactagtgattgggggatatacagctgagtagcagctaaatgggtgtgacaattggcctagctaaattattACGGGAAAAAAATCACGGCGGTTGCTTTCAGTTTTgtcattcaatattttttaatgcaaaagGTTTAAGGTGGTTTAAAGTTCTATCCATCTTACTTCatatttaattgattaattttatGGCAGCATATTTTTCCTGGATTTATCGATATCCTGTCTTTTCTATGTATTCTCCTCCATACCTCCATTGCAGTCTTAGAAGCTACAGCAACACAGAAGACTCCCTCACTCCTCACTACTTCTCACTACTTCTCATTACTTCTCACTTGTGGAAACACTCACGAGTGCATTGTCTTCTTCACACGAGTCAGCATGGACATGTGCTCAAGCTTTCGGAGGAAAAAATACATCTTGAGCAGATAGAAAAAGACTCCTACTCTTCTTCAGTGCCTATGAGAAGCTGCCTGTATCAGTAATacatctgtttgtgtgtgtttgagtatgtgtgtgtgtgtgtgtgtatgtgtgcttgtCTACTTTTGGATTTTCTTTTAGAATTTTATgaacaagaacaaaaaatgaGACATCTATTGTACACATCTATTCTTTGTTGAAGCATCAATGGTCACCTCTGTGTTCTCCTCTGACAGTGACGTGTTGTACACTTTCCAGAACCCCCTCGAAGGAAACCGGTCTTTAACTGCTTTGTAATGAGCGCAATGACTTCCTAAAACACTGACCAGAGCCTTGAACTTCGACCTTTGGATGTAACGTGTCGAACAGTCTATACTTGAAGCCAAAATTGGCTCTGAGGACCAGCTTGAAGATAAAGTTTAAAAAGGAAGGAAATCGTAAAACACGGCATCTTGTTTTTTCACACTATGTGCCAAAAATGAGTCTCTTTTGATTGTGTCAGTTTTTGATTTTAGTGAGTTTGATTTTGTGCATTAGAGTAGAAGAAGTCATTGGAATTGGCCTGTTCTCAAATGAGAAAAGTGTGCTTAAAATGCTTTGACTCATGATCTCTAAAATGGATTGAatataacttatatatttattgggtAAAGTAAACCACTTGTTTTGGGCTCATATCTGCAGTGGTTTATAAACCTGTACATTTGCATCATTTCTTTTTGATCATTTCATTGTAATTCaacaaaaaatgactttttattcTTCAGAAAACTAACAtgagtttaaaacaaaaatccatCTGCATTCACAGAAACAAATTTGAGTTGGAGTAGAGAATGCTTTAGGAATCACAGTTATTCAATAATGTTGACTATTGAACATGGTGGTGTGactaaaaagcacaaaattccTCTTCTGTGTATAAACATACTACATAAGATCTGTGTTTACTTGTTAAAGCTCTAttgaaaacaattaataaattgTAGTGTCCAAATTTTCCCAGATAAATTACAGGTGcaaattgaatatcattaaaaagttactttatttcagtaattcagttcaaaatgtgaaactctgcactatctattttaagcttttatttctcaaga

Function

GO: NA

KEGG:

id description
ko00515 Mannose type O-glycan biosynthesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80579 lncRNA downstream 173 48519003 ~ 48520310 (-) True G59773
TU80575 lncRNA downstream 86194 48433944 ~ 48434289 (-) True G59769
TU80558 lncRNA downstream 193218 48322221 ~ 48327265 (-) True G59752
TU80550 lncRNA downstream 515311 48004442 ~ 48005172 (-) True G59744
TU80507 lncRNA downstream 541513 47978487 ~ 47978970 (-) True G59705
TU80627 lncRNA upstream 239036 48761245 ~ 48822839 (-) True G59815
TU80635 lncRNA upstream 386071 48908280 ~ 48908811 (-) True G59823
TU80640 lncRNA upstream 458456 48980665 ~ 48981136 (-) True G59827
TU80670 lncRNA upstream 515464 49037673 ~ 49038066 (-) True G59856
XR_002650120.1 lncRNA upstream 519035 49041244 ~ 49043009 (-) True LOC111192741
XM_007236999.3 mRNA downstream 12291 48489929 ~ 48508192 (-) True wnt5a
XM_007237000.2 mRNA downstream 171114 48329753 ~ 48349369 (-) True lrtm1
XM_007237073.3 mRNA downstream 576487 47936506 ~ 47943996 (-) True LOC103032709
XM_007237002.3 mRNA downstream 601069 47912532 ~ 47919414 (-) True selenok
XM_007237003.3 mRNA downstream 609671 47895626 ~ 47910812 (-) True actr8
XM_022670821.1 mRNA upstream 40 48522249 ~ 48902841 (-) False erc2
XM_022670818.1 mRNA upstream 40 48522249 ~ 48902841 (-) False erc2
XM_022670815.1 mRNA upstream 40 48522249 ~ 48902841 (-) False erc2
XM_022670813.1 mRNA upstream 40 48522249 ~ 48902841 (-) False erc2
XM_022670820.1 mRNA upstream 40 48522249 ~ 48902841 (-) False erc2
TU80460 other downstream 601102 47816355 ~ 47919381 (-) False selenok
TU80461 other downstream 601102 47843007 ~ 47919381 (-) False selenok
XR_002650096.1 other downstream 1519819 46999584 ~ 47000664 (-) True LOC111192695
TU80091 other downstream 1838572 46623612 ~ 46681911 (-) False LOC103023429
TU79995 other downstream 2333589 46182741 ~ 46186894 (-) True G59341
TU80719 other upstream 540412 49062621 ~ 49083933 (-) False LOC103030200
TU80777 other upstream 782399 49304608 ~ 49305252 (-) True G59951
TU81451 other upstream 2305486 50827695 ~ 50832200 (-) True G60441
TU81746 other upstream 3184129 51706338 ~ 51708112 (-) True G60627

Expression Profile