RNA id: TU80627


Basic Information

Item Value
RNA id TU80627
length 586
lncRNA type sense_over
GC content 0.46
exon number 3
gene id G59815
representative True

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 48761245 ~ 48822839 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acttttttcctgattatttcattacattttacttgactaactatctttatctttgacagtgttgtgtaaactaagattcaaattgatgtttaatttcatgatgtctcttaatattaaactccttaattacggcaacttttagactctttggcgcgtttttctgcgctacaactgagcactctctccgcttttagactctttggcccgtttttctgcgctacaactgcgcaccctctccgcttttagactctttggcccgtttttctgcgctacaactgcgcaccctctccacttttagactctttggcccgtttttctgcgctacaactgcgcaccctctccgcttttagactctttggcccgtttttctgcgctacaactgcgcaccctctccgcttttagactctttggcccgtttttctgcgctacaactgaacaccctctccacttttagactctttggcccgtttttctgcgctacaactgagcactctctccgcttttagactctttggcccgtttttctgcgctacaactgcgcaccctctccgcttttagactctttggcccgtttttctgcgctaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80621 lncRNA downstream 239036 48520483 ~ 48522209 (-) True G59809
TU80579 lncRNA downstream 240935 48519003 ~ 48520310 (-) True G59773
TU80575 lncRNA downstream 326956 48433944 ~ 48434289 (-) True G59769
TU80558 lncRNA downstream 433980 48322221 ~ 48327265 (-) True G59752
TU80550 lncRNA downstream 756073 48004442 ~ 48005172 (-) True G59744
TU80635 lncRNA upstream 85441 48908280 ~ 48908811 (-) True G59823
TU80640 lncRNA upstream 157826 48980665 ~ 48981136 (-) True G59827
TU80670 lncRNA upstream 214834 49037673 ~ 49038066 (-) True G59856
XR_002650120.1 lncRNA upstream 218405 49041244 ~ 49043009 (-) True LOC111192741
TU80676 lncRNA upstream 222399 49045238 ~ 49045987 (-) True G59862
XM_007236999.3 mRNA downstream 253053 48489929 ~ 48508192 (-) True wnt5a
XM_007237000.2 mRNA downstream 411876 48329753 ~ 48349369 (-) True lrtm1
XM_007237073.3 mRNA downstream 817249 47936506 ~ 47943996 (-) True LOC103032709
XM_007237002.3 mRNA downstream 841831 47912532 ~ 47919414 (-) True selenok
XM_007237003.3 mRNA downstream 850433 47895626 ~ 47910812 (-) True actr8
XM_007236998.2 mRNA upstream 89149 48911988 ~ 48917131 (-) True tlr9
XM_007236997.2 mRNA upstream 89149 48911988 ~ 48917091 (-) False tlr9
XM_007236993.3 mRNA upstream 94943 48917782 ~ 48937325 (-) True apeh
XM_022670822.1 mRNA upstream 116898 48939737 ~ 48971138 (-) True LOC103035796
XM_022670823.1 mRNA upstream 116898 48939737 ~ 48971138 (-) False LOC103035796
TU80460 other downstream 841864 47816355 ~ 47919381 (-) False selenok
TU80461 other downstream 841864 47843007 ~ 47919381 (-) False selenok
XR_002650096.1 other downstream 1760581 46999584 ~ 47000664 (-) True LOC111192695
TU80091 other downstream 2079334 46623612 ~ 46681911 (-) False LOC103023429
TU79995 other downstream 2574351 46182741 ~ 46186894 (-) True G59341
TU80719 other upstream 239782 49062621 ~ 49083933 (-) False LOC103030200
TU80777 other upstream 481769 49304608 ~ 49305252 (-) True G59951
TU81451 other upstream 2004856 50827695 ~ 50832200 (-) True G60441
TU81746 other upstream 2883499 51706338 ~ 51708112 (-) True G60627

Expression Profile