RNA id: TU32454


Basic Information

Item Value
RNA id TU32454
length 108
RNA type TUCP
GC content 0.37
exon number 1
gene id G28706
representative True

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 7654772 ~ 7654879 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGACACGTGATGACTTTGGTATGATATTGATGGAAGGAAGCTGTAGCCGAAATGAACACGATGCGAACAGTATTTTTGCGCTTTTCGTGGGCACAGAGTTCGTGTTGGAGTAATGGCAGTCACCCTAACATATTCAGCTGCAGTCAACTACGCTCTATCAGTTCCATGGTTCTTTCAAGGACAGAGGGCGAGCAAACTTTCCTGCAAGGGAGCTTGAACACCAAATCAGAGGGACCCTGTGTTTTCCAGCAACCACTCTGGCACCATCAACAAGTCCGCACAGTCAAGCGTGGGACAGAATATCAACCAAAGAACATCAAACGAAAGAGGACCCATGGCTGGATCAAAAGAATTAGCGCCCCAGGTGGAATCGAAGTAATCCTGCGCCGAATGCTCAAAGGACGAAAATCCCTCACGCATTGAGACTCTGACCGGACAGTTGCTTTGATATACCTTTGAAGTGAATCTCAGTTAAATGTCAGTTGTGCAGTAGAGCTTCTGAGGTTCTATTTAAAATACTTGTCAAATTAAAGAAGTTAATGCACAGTTGCATCATTGGATGTTTTTTTTTCTTTTAATTTAGTGGATCTAATCCTTCTTCAAACTTCAAGTTGAGTATTTTCATGTCAAAGGGTCTGCTGTATTCAGTGTTACAGTCAGATCAGAGCATTTACTGTTTGAAGTTGGGACAGGGAGTATAGGTGACAAGTTTAAAATCAAAATAATAATAAATAAAAAAACACATTTGTCATGATGTATGGTATCATTTTATTTAAGCATTATACTTCATTTTTAAAAGCCATTTGAGGTGCATTTATTTGGTATTGTGATAATAGTACAAAAGTAAAAAAAAAAAAAAAACAGGGCTCTGAAGTTACTTGGTGTATAATGTGTCTAATATACTGTTTTTAAAATTTATTTTCACAGTAATTTCATTTTATTGCATTATGGGTTCACACTCATGAGATCAAAGTCAGCAAGGACAATACAATATTTTTAGATTGTCATATTTACTGTTTCATATAAGAAAAATAATAATGCGTAGAAAAATAGAAAATCTGTACATTTTTTTGATTAAAGACAGTGCTCATTCAAACGTCGTTTCTTGCTTGCCCATGCCTAAACAGAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32453 lncRNA upstream 6751 7647287 ~ 7648021 (+) True G28705
TU32462 lncRNA upstream 21194 7620115 ~ 7633578 (+) True G28710
TU32467 lncRNA upstream 157908 7491896 ~ 7496864 (+) True G28714
TU32430 lncRNA upstream 217036 7437236 ~ 7437736 (+) True G28686
TU32426 lncRNA upstream 226010 7427242 ~ 7428762 (+) True G28682
TU32483 lncRNA downstream 5524 7661907 ~ 7663273 (+) True G28730
TU32484 lncRNA downstream 8342 7664725 ~ 7664993 (+) True G28731
TU32491 lncRNA downstream 9689 7666072 ~ 7666828 (+) False G28732
TU32488 lncRNA downstream 9899 7666282 ~ 7666828 (+) False G28732
TU32485 lncRNA downstream 10080 7666463 ~ 7666828 (+) True G28732
CI01000004_07642418_07645369.mRNA mRNA upstream 8813 7642361 ~ 7645959 (+) False CI01000004_07642418_07645369
CI01000004_07585030_07601316.mRNA mRNA upstream 52059 7584727 ~ 7602713 (+) True CI01000004_07585030_07601316
CI01000004_07568950_07581744.mRNA mRNA upstream 72100 7568950 ~ 7582672 (+) True CI01000004_07568950_07581744
CI01000004_07515025_07559926.mRNA mRNA upstream 94371 7515025 ~ 7560401 (+) True CI01000004_07515025_07559926
CI01000004_07375432_07378296.mRNA mRNA upstream 276085 7375432 ~ 7378687 (+) True CI01000004_07375432_07378296
CI01000004_07686845_07692184.mRNA mRNA downstream 29635 7686018 ~ 7693082 (+) True CI01000004_07686845_07692184
CI01000004_07712175_07712384.mRNA mRNA downstream 55792 7712175 ~ 7712402 (+) True CI01000004_07712175_07712384
CI01000004_07759670_07760529.mRNA mRNA downstream 103235 7759618 ~ 7760997 (+) False CI01000004_07759670_07760529
CI01000004_07775338_07780352.mRNA mRNA downstream 118859 7775242 ~ 7781318 (+) True CI01000004_07775338_07780352
CI01000004_07823292_07824588.mRNA mRNA downstream 166453 7822836 ~ 7826203 (+) True CI01000004_07823292_07824588
TU32079 other upstream 1080351 6572819 ~ 6574421 (+) True G28354
TU32005 other upstream 1152685 6470028 ~ 6502087 (+) True G28302
TU31830 other upstream 1921771 5732589 ~ 5733001 (+) True G28165
TU31416 other upstream 2280969 5372825 ~ 5373803 (+) False G27805
TU32590 other downstream 777322 8439958 ~ 8451227 (+) True G28818
TU32637 other downstream 942852 8599235 ~ 8599603 (+) True G28859
TU32792 other downstream 1320055 8976438 ~ 8980984 (+) False CI01000004_08976512_08980033
TU32793 other downstream 1320055 8976438 ~ 8980984 (+) True CI01000004_08976512_08980033
TU34813 other downstream 2840993 10497376 ~ 10497788 (+) True G30797

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00030883 False 937 mRNA 0.42 2 NC_007113.7 24317465 ~ 24320183 (+)
tiger barb (Puntius tetrazona) TU16565 False 791 TUCP 0.44 2 NC_056700.1 11339863 ~ 11341111 (+)
mexican tetra (Astyanax mexicanus) TU16565 True 202 lncRNA 0.35 2 NC_035898.1 21322038 ~ 21323725 (+)