RNA id: TCONS_00013122


Basic Information

Item Value
RNA id TCONS_00013122
length 343
RNA type mRNA
GC content 0.52
exon number 3
gene id XLOC_006820
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 37186303 ~ 37189560 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCTATTACAGGAAGTCTCACAGTCATTACAGGAAGTGGAGGAGCAGGTGAAGACAGCCATTGAGAAAAGTGGCCCACTTCACAGGCTGGGTGCAAAAATCTCAGAGATTAAAGCAGGTCTGGGATCAGTTCAGAGCTGGTTGGAGCAGAAGAGTCTGAACTTTCCTGAAGCGGAGGTCACACAGAAGCGAGTGTGGGATGAGCTGGACGGTTTACATACTTGTCTGGCTGCAGTCGAGGTGGAGCTGCAGGATGTGAGTGAAATGCATCCAGACGAGACGCGACTGATTCTGGACAACCTGGTCAACTCACAGCAGACCCACACACGCCTCACCAAACAGGC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000134789

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013499 lncRNA downstream 75767 37110212 ~ 37110536 (-) True XLOC_006817
TCONS_00013498 lncRNA downstream 174067 37009812 ~ 37012236 (-) True XLOC_006815
TCONS_00013873 lncRNA downstream 188543 36995633 ~ 36997760 (-) True XLOC_006814
TCONS_00013101 lncRNA downstream 564378 36613162 ~ 36621925 (-) True XLOC_006805
TCONS_00013099 lncRNA downstream 574144 36587770 ~ 36612159 (-) True XLOC_006804
TCONS_00013136 lncRNA upstream 338601 37528161 ~ 37535327 (-) False XLOC_006829
TCONS_00013135 lncRNA upstream 338601 37528161 ~ 37535424 (-) False XLOC_006829
TCONS_00013874 lncRNA upstream 338601 37528161 ~ 37535785 (-) True XLOC_006829
TCONS_00013142 lncRNA upstream 417497 37607057 ~ 37608372 (-) True XLOC_006832
TCONS_00013145 lncRNA upstream 420244 37609804 ~ 37613031 (-) False XLOC_006833
TCONS_00013120 mRNA downstream 5488 37171976 ~ 37180815 (-) True XLOC_006818
TCONS_00013114 mRNA downstream 58333 37075322 ~ 37127970 (-) False XLOC_006816
TCONS_00013119 mRNA downstream 64086 37106039 ~ 37122217 (-) True XLOC_006816
TCONS_00013118 mRNA downstream 76316 37105818 ~ 37109987 (-) False XLOC_006816
TCONS_00013115 mRNA downstream 77993 37077982 ~ 37108310 (-) False XLOC_006816
TCONS_00013123 mRNA upstream 9738 37199298 ~ 37200120 (-) True XLOC_006821
TCONS_00013124 mRNA upstream 18900 37208460 ~ 37210369 (-) True XLOC_006822
TCONS_00013125 mRNA upstream 37490 37227050 ~ 37229245 (-) True XLOC_006823
TCONS_00013126 mRNA upstream 59438 37248998 ~ 37254777 (-) True XLOC_006824
TCONS_00013128 mRNA upstream 113015 37302575 ~ 37383625 (-) False XLOC_006825
TCONS_00013121 other downstream 7587 37178602 ~ 37178716 (-) True XLOC_006819
TCONS_00013107 other downstream 424987 36757555 ~ 36761316 (-) True XLOC_006809
TCONS_00013090 other downstream 651231 36530420 ~ 36535072 (-) False XLOC_006800
TCONS_00013082 other downstream 786928 36399260 ~ 36399375 (-) True XLOC_006797
TCONS_00013079 other downstream 794812 36321091 ~ 36391491 (-) False XLOC_006796
TCONS_00013139 other upstream 404955 37594515 ~ 37600539 (-) False XLOC_006831
TCONS_00013140 other upstream 409151 37598711 ~ 37599245 (-) True XLOC_006831
TCONS_00013157 other upstream 461113 37650673 ~ 37656690 (-) False XLOC_006839
TCONS_00013167 other upstream 1663577 38853137 ~ 38853252 (-) True XLOC_006846
TCONS_00013170 other upstream 2052995 39242555 ~ 39242672 (-) True XLOC_006848

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU82177 True 1063 lncRNA 0.53 7 CI01000012 4761430 ~ 4767781 (-)
tiger barb (Puntius tetrazona) TU82177 False 358 TUCP 0.60 1 NC_056705.1 23047752 ~ 23048109 (+)