RNA id: TCONS_00013125


Basic Information

Item Value
RNA id TCONS_00013125
length 409
RNA type mRNA
GC content 0.46
exon number 3
gene id XLOC_006823
representative True

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 37227050 ~ 37229245 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGATTCGCATTACAGGGTCAGCTAAATAGAAATgaacaatgcatgctgggagatCATCCCTCAGAATCAGTCACTCCTACAGACCTGCAGAAACGACTGAGAGAATTAAAGTCTCTGTGGGACGAGACCGAATCTCTGTGGAAAGAGTATGAAACGATGTGTATGCAGTGTGTTCAGTACAATGAGCGAGCAGTTGAGCAGGACCGCATGGAGCTCACCGTCCGGTGGAGAGAGCAGAAGTCACAGTTACAGGGCAGGGTGGATTCGCTGGGAGCAGCTCTTGAGCTCATGGACTCCATTACGCTGAAGATTTCAGAAATTTCTGAAAAACTTGACAAGTTCATCAAAGAGCCCAAAGACATCAAGGGATATACACTAGCTAATCCTGCAATTTTGAGAGATGTGAAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000140923

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00013499 lncRNA downstream 116514 37110212 ~ 37110536 (-) True XLOC_006817
TCONS_00013498 lncRNA downstream 214814 37009812 ~ 37012236 (-) True XLOC_006815
TCONS_00013873 lncRNA downstream 229290 36995633 ~ 36997760 (-) True XLOC_006814
TCONS_00013101 lncRNA downstream 605125 36613162 ~ 36621925 (-) True XLOC_006805
TCONS_00013099 lncRNA downstream 614891 36587770 ~ 36612159 (-) True XLOC_006804
TCONS_00013136 lncRNA upstream 298916 37528161 ~ 37535327 (-) False XLOC_006829
TCONS_00013135 lncRNA upstream 298916 37528161 ~ 37535424 (-) False XLOC_006829
TCONS_00013874 lncRNA upstream 298916 37528161 ~ 37535785 (-) True XLOC_006829
TCONS_00013142 lncRNA upstream 377812 37607057 ~ 37608372 (-) True XLOC_006832
TCONS_00013145 lncRNA upstream 380559 37609804 ~ 37613031 (-) False XLOC_006833
TCONS_00013124 mRNA downstream 16681 37208460 ~ 37210369 (-) True XLOC_006822
TCONS_00013123 mRNA downstream 26930 37199298 ~ 37200120 (-) True XLOC_006821
TCONS_00013122 mRNA downstream 37490 37186303 ~ 37189560 (-) True XLOC_006820
TCONS_00013120 mRNA downstream 46235 37171976 ~ 37180815 (-) True XLOC_006818
TCONS_00013119 mRNA downstream 104833 37106039 ~ 37122217 (-) True XLOC_006816
TCONS_00013126 mRNA upstream 19753 37248998 ~ 37254777 (-) True XLOC_006824
TCONS_00013128 mRNA upstream 73330 37302575 ~ 37383625 (-) False XLOC_006825
TCONS_00013127 mRNA upstream 73330 37302575 ~ 37383625 (-) False XLOC_006825
TCONS_00013129 mRNA upstream 93800 37323045 ~ 37383625 (-) True XLOC_006825
TCONS_00013130 mRNA upstream 192088 37421333 ~ 37465524 (-) False XLOC_006826
TCONS_00013121 other downstream 48334 37178602 ~ 37178716 (-) True XLOC_006819
TCONS_00013107 other downstream 465734 36757555 ~ 36761316 (-) True XLOC_006809
TCONS_00013090 other downstream 691978 36530420 ~ 36535072 (-) False XLOC_006800
TCONS_00013082 other downstream 827675 36399260 ~ 36399375 (-) True XLOC_006797
TCONS_00013081 other downstream 896151 36321431 ~ 36330899 (-) True XLOC_006796
TCONS_00013139 other upstream 365270 37594515 ~ 37600539 (-) False XLOC_006831
TCONS_00013140 other upstream 369466 37598711 ~ 37599245 (-) True XLOC_006831
TCONS_00013157 other upstream 421428 37650673 ~ 37656690 (-) False XLOC_006839
TCONS_00013167 other upstream 1623892 38853137 ~ 38853252 (-) True XLOC_006846
TCONS_00013170 other upstream 2013310 39242555 ~ 39242672 (-) True XLOC_006848

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU82151 False 3183 lncRNA 0.49 18 CI01000012 4734337 ~ 4744874 (-)