RNA id: TU73906


Basic Information

Item Value
RNA id TU73906
length 225
lncRNA type intronic
GC content 0.32
exon number 1
gene id G64935
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 6185470 ~ 6185694 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAATAAAAGCTTTTATTGGACTAACAAGGAAGTTTTCAGTTCTAAAAATTACAGGATATTCTTATAGTACGATGACCTCATATATGTGAAAAGCTCAAGGAAAAGTTGATTTCTCAATTCATTGACAACTTTAAGCAAGCACAACCGTTTTCAGTTTGAAAAGAAATGTTTCTTGAGCAGAAAATCAGCATATTAGAATGACACTGAAGACTGGAGTAATGATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73905 lncRNA downstream 859 6184402 ~ 6184611 (-) True G64934
TU73903 lncRNA downstream 3027 6182201 ~ 6182443 (-) True G64932
TU73757 lncRNA downstream 3642 6166736 ~ 6181828 (-) False G64795
TU73756 lncRNA downstream 12301 6171948 ~ 6173169 (-) True G64795
TU73781 lncRNA downstream 31719 6153172 ~ 6153751 (-) True G64819
TU73907 lncRNA upstream 456 6186150 ~ 6186652 (-) True G64936
TU73908 lncRNA upstream 996 6186690 ~ 6186954 (-) True G64937
TU73909 lncRNA upstream 1311 6187005 ~ 6187458 (-) True G64938
TU73910 lncRNA upstream 3645 6189339 ~ 6189797 (-) True G64939
TU73912 lncRNA upstream 5186 6190880 ~ 6191456 (-) True G64941
CI01000010_06107283_06108881.mRNA mRNA downstream 76481 6105579 ~ 6108989 (-) True CI01000010_06107283_06108881
CI01000010_06083696_06089271.mRNA mRNA downstream 95896 6083543 ~ 6089574 (-) True CI01000010_06083696_06089271
CI01000010_05921406_05962819.mRNA mRNA downstream 222651 5921124 ~ 5962819 (-) True CI01000010_05921406_05962819
CI01000010_05743309_05757933.mRNA mRNA downstream 427537 5743309 ~ 5757933 (-) True CI01000010_05743309_05757933
CI01000010_05734012_05743267.mRNA mRNA downstream 441971 5733797 ~ 5743499 (-) True CI01000010_05734012_05743267
CI01000010_06253230_06263855.mRNA mRNA upstream 66672 6252366 ~ 6263855 (-) True CI01000010_06253230_06263855
CI01000010_06456276_06481282.mRNA mRNA upstream 270582 6456276 ~ 6481427 (-) True CI01000010_06456276_06481282
CI01000010_06504062_06505040.mRNA mRNA upstream 318289 6503983 ~ 6505276 (-) True CI01000010_06504062_06505040
CI01000010_06588155_06615737.mRNA mRNA upstream 401526 6587220 ~ 6615737 (-) True CI01000010_06588155_06615737
CI01000010_06625010_06627729.mRNA mRNA upstream 438496 6624190 ~ 6627729 (-) True CI01000010_06625010_06627729
TU73887 other downstream 88990 6093689 ~ 6096480 (-) False G64918
TU73846 other downstream 268459 5916257 ~ 5917011 (-) True G64877
TU73495 other downstream 942544 5049155 ~ 5242926 (-) True G64564
TU73132 other downstream 1571914 4613485 ~ 4613556 (-) True G64230
TU73142 other downstream 1949054 4229950 ~ 4236416 (-) False G64237
TU74496 other upstream 1477997 7663691 ~ 7672343 (-) False G65453
TU74478 other upstream 1656942 7842636 ~ 7873650 (-) True G65441
TU76444 other upstream 2455996 8641690 ~ 8674897 (-) True G67099
TU77386 other upstream 5743267 11928961 ~ 11932254 (-) True CI01000010_11929215_11933223
TU77396 other upstream 5779171 11968202 ~ 11968254 (-) True G67957

Expression Profile