RNA id: TU73909


Basic Information

Item Value
RNA id TU73909
length 454
lncRNA type intronic
GC content 0.32
exon number 1
gene id G64938
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 6187005 ~ 6187458 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAACGCCCACTGCTGTGATTGGCTTACATCTTTGCATATGAAATAGCTAAGATTACTCTCTTGAAAACTTTTACCACATTTTTACTATTACAGCTCTCAAGGTTAACTAATCATGAAAAGTGTTGATTATAAACTTTAAACCCTAACTCTCAAAATACTTAATTGGTTTGAGTAGGACAAACTTAAATTGAACAAATAAGTTCAGTTAAATTAATTGTTACGAGTATTTAGCACTTTCTTTTTCTTTTGAGTTCACAGTACTGACATATTTCAAGTAAACTGAACTATTTCATCGTTTTGAGTTGTATGAACTCATTTCTTTTAATTTAGACTAACTTAAGTTTAACTGAAACTGGGCTGGGATTTCTGTTTCCCAGCATGCTTTGCCCATGGCACTCGAAATGGAGAGTAAATGCTAAAATTAAGTGTTATTGTGCAAGATTAATGGTAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73908 lncRNA downstream 51 6186690 ~ 6186954 (-) True G64937
TU73907 lncRNA downstream 353 6186150 ~ 6186652 (-) True G64936
TU73906 lncRNA downstream 1311 6185470 ~ 6185694 (-) True G64935
TU73905 lncRNA downstream 2394 6184402 ~ 6184611 (-) True G64934
TU73903 lncRNA downstream 4562 6182201 ~ 6182443 (-) True G64932
TU73910 lncRNA upstream 1881 6189339 ~ 6189797 (-) True G64939
TU73912 lncRNA upstream 3422 6190880 ~ 6191456 (-) True G64941
TU73913 lncRNA upstream 4714 6192172 ~ 6192381 (-) True G64942
TU73914 lncRNA upstream 5161 6192619 ~ 6192847 (-) True G64943
TU73915 lncRNA upstream 5665 6193123 ~ 6193329 (-) True G64944
CI01000010_06107283_06108881.mRNA mRNA downstream 78016 6105579 ~ 6108989 (-) True CI01000010_06107283_06108881
CI01000010_06083696_06089271.mRNA mRNA downstream 97431 6083543 ~ 6089574 (-) True CI01000010_06083696_06089271
CI01000010_05921406_05962819.mRNA mRNA downstream 224186 5921124 ~ 5962819 (-) True CI01000010_05921406_05962819
CI01000010_05743309_05757933.mRNA mRNA downstream 429072 5743309 ~ 5757933 (-) True CI01000010_05743309_05757933
CI01000010_05734012_05743267.mRNA mRNA downstream 443506 5733797 ~ 5743499 (-) True CI01000010_05734012_05743267
CI01000010_06253230_06263855.mRNA mRNA upstream 64908 6252366 ~ 6263855 (-) True CI01000010_06253230_06263855
CI01000010_06456276_06481282.mRNA mRNA upstream 268818 6456276 ~ 6481427 (-) True CI01000010_06456276_06481282
CI01000010_06504062_06505040.mRNA mRNA upstream 316525 6503983 ~ 6505276 (-) True CI01000010_06504062_06505040
CI01000010_06588155_06615737.mRNA mRNA upstream 399762 6587220 ~ 6615737 (-) True CI01000010_06588155_06615737
CI01000010_06625010_06627729.mRNA mRNA upstream 436732 6624190 ~ 6627729 (-) True CI01000010_06625010_06627729
TU73887 other downstream 90525 6093689 ~ 6096480 (-) False G64918
TU73846 other downstream 269994 5916257 ~ 5917011 (-) True G64877
TU73495 other downstream 944079 5049155 ~ 5242926 (-) True G64564
TU73132 other downstream 1573449 4613485 ~ 4613556 (-) True G64230
TU73142 other downstream 1950589 4229950 ~ 4236416 (-) False G64237
TU74496 other upstream 1476233 7663691 ~ 7672343 (-) False G65453
TU74478 other upstream 1655178 7842636 ~ 7873650 (-) True G65441
TU76444 other upstream 2454232 8641690 ~ 8674897 (-) True G67099
TU77386 other upstream 5741503 11928961 ~ 11932254 (-) True CI01000010_11929215_11933223
TU77396 other upstream 5777407 11968202 ~ 11968254 (-) True G67957

Expression Profile