RNA id: TU73910


Basic Information

Item Value
RNA id TU73910
length 459
lncRNA type intronic
GC content 0.40
exon number 1
gene id G64939
representative True

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 6189339 ~ 6189797 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCACGAATAAATTATTGATAATAAATACTACAATATTCCATAAAAAAATAAGAGTTGTCAATTTTGATTTCATGCACACATTTTAACAGATGCTTCCCAGTCAAGTCATTCTCTCAATGTCGTCAAAACTTCATCAGTGTCAGCCAGCCAGCTAACTCTCTCAGACTGGCCTCAGGTCAGCAGACCATCGTTATTGTTGAGTCCTGGACTGGCTTAGTCTGTAATAGAGGGAACATGAAACTAGACACAAGTAAGGATTAACTGTAGAGGGGAACTAGGGGCCAATCAATACTGTAGTCGTTCCATAGGAGGAAAGAGAAACTAAATCGAAACTAAATCTCTATATTTGGAGGGGGGCAGCTAGTGACATTCACATGTTTTTTTTCTCCGTTGAGATGTTTTTCTCAGACAACAGAGTGTCTGGTTTTAACAGAAAAGGCTTAGGCAGGGAAGCTTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73909 lncRNA downstream 1881 6187005 ~ 6187458 (-) True G64938
TU73908 lncRNA downstream 2385 6186690 ~ 6186954 (-) True G64937
TU73907 lncRNA downstream 2687 6186150 ~ 6186652 (-) True G64936
TU73906 lncRNA downstream 3645 6185470 ~ 6185694 (-) True G64935
TU73905 lncRNA downstream 4728 6184402 ~ 6184611 (-) True G64934
TU73912 lncRNA upstream 1083 6190880 ~ 6191456 (-) True G64941
TU73913 lncRNA upstream 2375 6192172 ~ 6192381 (-) True G64942
TU73914 lncRNA upstream 2822 6192619 ~ 6192847 (-) True G64943
TU73915 lncRNA upstream 3326 6193123 ~ 6193329 (-) True G64944
TU73916 lncRNA upstream 9894 6199691 ~ 6200059 (-) True G64945
CI01000010_06107283_06108881.mRNA mRNA downstream 80350 6105579 ~ 6108989 (-) True CI01000010_06107283_06108881
CI01000010_06083696_06089271.mRNA mRNA downstream 99765 6083543 ~ 6089574 (-) True CI01000010_06083696_06089271
CI01000010_05921406_05962819.mRNA mRNA downstream 226520 5921124 ~ 5962819 (-) True CI01000010_05921406_05962819
CI01000010_05743309_05757933.mRNA mRNA downstream 431406 5743309 ~ 5757933 (-) True CI01000010_05743309_05757933
CI01000010_05734012_05743267.mRNA mRNA downstream 445840 5733797 ~ 5743499 (-) True CI01000010_05734012_05743267
CI01000010_06253230_06263855.mRNA mRNA upstream 62569 6252366 ~ 6263855 (-) True CI01000010_06253230_06263855
CI01000010_06456276_06481282.mRNA mRNA upstream 266479 6456276 ~ 6481427 (-) True CI01000010_06456276_06481282
CI01000010_06504062_06505040.mRNA mRNA upstream 314186 6503983 ~ 6505276 (-) True CI01000010_06504062_06505040
CI01000010_06588155_06615737.mRNA mRNA upstream 397423 6587220 ~ 6615737 (-) True CI01000010_06588155_06615737
CI01000010_06625010_06627729.mRNA mRNA upstream 434393 6624190 ~ 6627729 (-) True CI01000010_06625010_06627729
TU73887 other downstream 92859 6093689 ~ 6096480 (-) False G64918
TU73846 other downstream 272328 5916257 ~ 5917011 (-) True G64877
TU73495 other downstream 946413 5049155 ~ 5242926 (-) True G64564
TU73132 other downstream 1575783 4613485 ~ 4613556 (-) True G64230
TU73142 other downstream 1952923 4229950 ~ 4236416 (-) False G64237
TU74496 other upstream 1473894 7663691 ~ 7672343 (-) False G65453
TU74478 other upstream 1652839 7842636 ~ 7873650 (-) True G65441
TU76444 other upstream 2451893 8641690 ~ 8674897 (-) True G67099
TU77386 other upstream 5739164 11928961 ~ 11932254 (-) True CI01000010_11929215_11933223
TU77396 other upstream 5775068 11968202 ~ 11968254 (-) True G67957

Expression Profile