RNA id: CI01000027_04988247_04994680.mRNA


Basic Information

Item Value
RNA id CI01000027_04988247_04994680.mRNA
length 358
RNA type mRNA
GC content 0.47
exon number 3
gene id CI01000027_04988247_04994680
representative False

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4988234 ~ 4994680 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCGCGAAGGACTTGTTGCACCCAACGCCAGAGGAGGAGAAGAGAAGACACAAGAAGAAGCGTCTCGTACAGAGTCCCAACTCTTACTTTATGGATGTCAAATGCCCAGGCTGTTATAAGATCACTACGGTGTTCAGTCACGCACAGACGGTCGTCTTATGTGTAGGATGCTCTACAGTGCTGTGCCAGCCTACCGGAGGAAAGGCACGCCTCACAGAAGAATCAGAAATTAAACCTCTTGTGTGTGACTCTACCTATGAAAAGTGCAGCGGTGGTGGCCAGTACAGCAAAAAGAGCAAATATCGAAATGAACAAAAGCCCAAAATTTGTTCCAAGGTCACCTGAACATACAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161053 lncRNA downstream 102047 4885987 ~ 4886187 (-) True G141734
TU161050 lncRNA downstream 104333 4883680 ~ 4883901 (-) True G141731
TU161049 lncRNA downstream 106579 4881443 ~ 4881655 (-) True G141730
TU161046 lncRNA downstream 112571 4875221 ~ 4875663 (-) True G141727
TU160967 lncRNA downstream 114467 4873119 ~ 4873767 (-) True G141650
TU161091 lncRNA upstream 12315 5006995 ~ 5009205 (-) True G141768
TU160906 lncRNA upstream 72406 5067086 ~ 5174582 (-) False G141591
TU160907 lncRNA upstream 74756 5069436 ~ 5070830 (-) False G141592
TU160909 lncRNA upstream 74756 5069436 ~ 5070830 (-) True G141592
TU160903 lncRNA upstream 79618 5074298 ~ 5075919 (-) False G141591
CI01000027_04812648_04813272.mRNA mRNA downstream 174357 4812622 ~ 4813877 (-) True CI01000027_04812648_04813272
CI01000027_04750483_04762663.mRNA mRNA downstream 225571 4750320 ~ 4762663 (-) True CI01000027_04750483_04762663
CI01000027_04744526_04745444.mRNA mRNA downstream 241536 4744358 ~ 4746698 (-) True CI01000027_04744526_04745444
CI01000027_04603997_04606475.mRNA mRNA downstream 380440 4603444 ~ 4607794 (-) False CI01000027_04603997_04606475
CI01000027_04524446_04527464.mRNA mRNA downstream 460770 4523811 ~ 4527464 (-) True CI01000027_04524446_04527464
CI01000027_05037013_05040668.mRNA mRNA upstream 40507 5035187 ~ 5040668 (-) True CI01000027_05037013_05040668
CI01000027_05047401_05048081.mRNA mRNA upstream 52613 5047293 ~ 5048081 (-) True CI01000027_05047401_05048081
CI01000027_05110063_05126542.mRNA mRNA upstream 115383 5110063 ~ 5126542 (-) False CI01000027_05110063_05126542
CI01000027_05196462_05200451.mRNA mRNA upstream 201769 5196449 ~ 5200451 (-) False CI01000027_05196462_05200451
CI01000027_05215497_05251776.mRNA mRNA upstream 220117 5214797 ~ 5251776 (-) True CI01000027_05215497_05251776
TU161047 other downstream 110468 4877067 ~ 4877766 (-) True G141728
TU160774 other downstream 479263 4507475 ~ 4508971 (-) True G141488
TU160765 other downstream 575424 4372247 ~ 4412810 (-) False G141481
TU160760 other downstream 575424 4404952 ~ 4412810 (-) True G141481
TU159388 other downstream 1062662 3922396 ~ 3925572 (-) True CI01000027_03922380_03931033
TU160890 other upstream 113655 5108335 ~ 5201155 (-) True G141588
TU160937 other upstream 454646 5449326 ~ 5450363 (-) True CI01000027_05447458_05450346
TU160955 other upstream 1793947 6788627 ~ 6796707 (-) True G141638
TU161587 other upstream 2146414 7141094 ~ 7143063 (-) True G142203
TU161596 other upstream 2158943 7153623 ~ 7157813 (-) False G142209

Expression Profile