RNA id: TU276940


Basic Information

Item Value
RNA id TU276940
length 527
lncRNA type antisense_over
GC content 0.36
exon number 1
gene id G243999
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 2704917 ~ 2705443 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAGGAAGCTATATAGTTTCATGCCTAAAGACACAATTTAAACTGTGGAAAAAAATAAATATTATAAATAAGCATAAAATATAATTTGGAAATATTTAGTTTCTATTACAATACTTTCCTTTTTTGTTCTACTCACTATGGAATGGTACTAAATTAATCTATGCTGTTAGATTTATGCATTTATTAAAAATAAATAACTAAAAAAAAATGTGTTAATCAAGTTCTTCATTTAGTTTAAGCTTTTTCCATGGACCACCTAGCTGCAGAACCCAGTTTGAAAACCCCTAGTTTAATAAACCATTGTAATGCAAAATAAGGTGTACCTGAGATGGACCACAGACTCATTTAGAGTCACTATGTTGAATACTACATTAGCTTTGCTGTTGCGGTAGATGCTGTTCATGGCGGTGACAGCTGCTCCCAGCCTCTCCTCTGGAGCAGTGATGAGAACTGGGATCTCATCTCCTGCTCTGATGACCTTATGATCCGACAGGAAGTCAGTCTCAAAGGGCAGGGCCATCCCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU276926 lncRNA upstream 22856 2596705 ~ 2682061 (+) True G243989
TU276925 lncRNA upstream 23100 2596705 ~ 2681817 (+) False G243989
TU276944 lncRNA upstream 38607 2663028 ~ 2666310 (+) True G244003
TU276933 lncRNA upstream 44324 2651030 ~ 2660593 (+) True G243992
TU276931 lncRNA upstream 52357 2635237 ~ 2652560 (+) True G243991
TU276985 lncRNA downstream 3122 2708565 ~ 2708955 (+) True G244042
TU276986 lncRNA downstream 5130 2710573 ~ 2710781 (+) True G244043
TU276987 lncRNA downstream 7611 2713054 ~ 2713474 (+) True G244044
TU276988 lncRNA downstream 8553 2713996 ~ 2714198 (+) True G244045
TU276989 lncRNA downstream 8883 2714326 ~ 2714614 (+) True G244046
CI01000057_02693930_02700711.mRNA mRNA upstream 4206 2693930 ~ 2700711 (+) True CI01000057_02693930_02700711
CI01000057_02618561_02619733.mRNA mRNA upstream 85146 2618420 ~ 2619771 (+) True CI01000057_02618561_02619733
CI01000057_02548444_02558549.mRNA mRNA upstream 145225 2547895 ~ 2559692 (+) True CI01000057_02548444_02558549
CI01000057_02416295_02420310.mRNA mRNA upstream 284375 2416295 ~ 2420542 (+) True CI01000057_02416295_02420310
CI01000057_02412538_02415631.mRNA mRNA upstream 288984 2411516 ~ 2415933 (+) True CI01000057_02412538_02415631
CI01000057_02707814_02708251.mRNA mRNA downstream 2371 2707814 ~ 2708374 (+) True CI01000057_02707814_02708251
CI01000057_02758170_02782493.mRNA mRNA downstream 52727 2758170 ~ 2782566 (+) True CI01000057_02758170_02782493
CI01000057_02794112_02799150.mRNA mRNA downstream 88548 2793991 ~ 2799153 (+) True CI01000057_02794112_02799150
CI01000057_02884788_02888727.mRNA mRNA downstream 178638 2884081 ~ 2888805 (+) True CI01000057_02884788_02888727
CI01000057_03326630_03330891.mRNA mRNA downstream 619276 3324719 ~ 3331089 (+) True CI01000057_03326630_03330891
TU276930 other upstream 52357 2635237 ~ 2652560 (+) False G243991
TU276911 other upstream 128065 2576453 ~ 2576852 (+) False G243975
TU276910 other upstream 128065 2576470 ~ 2576852 (+) True G243975
TU276844 other upstream 308435 2394598 ~ 2396482 (+) True CI01000057_02395285_02396439
TU276421 other upstream 1746546 956063 ~ 958371 (+) True G243558
TU278389 other downstream 381653 3087096 ~ 3292562 (+) True G245231
TU278566 other downstream 832126 3537569 ~ 3538442 (+) True G245401
TU278506 other downstream 1136585 3842028 ~ 3844691 (+) True CI01000057_03842028_03844033
TU278663 other downstream 1504454 4209897 ~ 4212081 (+) True G245486
TU278934 other downstream 2393242 5098685 ~ 5101450 (+) False G245725

Expression Profile