RNA id: TU276988


Basic Information

Item Value
RNA id TU276988
length 203
lncRNA type antisense_over
GC content 0.46
exon number 1
gene id G244045
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 2713996 ~ 2714198 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCATGTGCACATGCATTCTTTATAGGGATATTTTGTATACAGTAGTTTAAAACAGTCCCCAATGTTTCACCTGCTGTTCTGGAGCGTTCTTGGATGAGAGGTTGGTGGGTCTGTTCGTCTCTGAGTTACTCTGGCCTTTCTGTGCACTGTTTATTGATAGCACATCTTCAGGAAGAGGCGGCAGAGGTCTGGGCACTGCTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU276987 lncRNA upstream 522 2713054 ~ 2713474 (+) True G244044
TU276986 lncRNA upstream 3215 2710573 ~ 2710781 (+) True G244043
TU276985 lncRNA upstream 5041 2708565 ~ 2708955 (+) True G244042
TU276940 lncRNA upstream 8553 2704917 ~ 2705443 (+) True G243999
TU276944 lncRNA upstream 47686 2663028 ~ 2666310 (+) True G244003
TU276989 lncRNA downstream 128 2714326 ~ 2714614 (+) True G244046
TU276991 lncRNA downstream 1261 2715459 ~ 2716261 (+) True G244047
TU276941 lncRNA downstream 4343 2718541 ~ 2718791 (+) True G244000
TU276942 lncRNA downstream 5726 2719924 ~ 2720171 (+) True G244001
TU276951 lncRNA downstream 24159 2738357 ~ 2743207 (+) True G244010
CI01000057_02707814_02708251.mRNA mRNA upstream 5622 2707814 ~ 2708374 (+) True CI01000057_02707814_02708251
CI01000057_02693930_02700711.mRNA mRNA upstream 13285 2693930 ~ 2700711 (+) True CI01000057_02693930_02700711
CI01000057_02618561_02619733.mRNA mRNA upstream 94225 2618420 ~ 2619771 (+) True CI01000057_02618561_02619733
CI01000057_02548444_02558549.mRNA mRNA upstream 154304 2547895 ~ 2559692 (+) True CI01000057_02548444_02558549
CI01000057_02416295_02420310.mRNA mRNA upstream 293454 2416295 ~ 2420542 (+) True CI01000057_02416295_02420310
CI01000057_02758170_02782493.mRNA mRNA downstream 43972 2758170 ~ 2782566 (+) True CI01000057_02758170_02782493
CI01000057_02794112_02799150.mRNA mRNA downstream 79793 2793991 ~ 2799153 (+) True CI01000057_02794112_02799150
CI01000057_02884788_02888727.mRNA mRNA downstream 169883 2884081 ~ 2888805 (+) True CI01000057_02884788_02888727
CI01000057_03326630_03330891.mRNA mRNA downstream 610521 3324719 ~ 3331089 (+) True CI01000057_03326630_03330891
CI01000057_03496993_03600733.mRNA mRNA downstream 782795 3496993 ~ 3600733 (+) True CI01000057_03496993_03600733
TU276930 other upstream 61436 2635237 ~ 2652560 (+) False G243991
TU276911 other upstream 137144 2576453 ~ 2576852 (+) False G243975
TU276910 other upstream 137144 2576470 ~ 2576852 (+) True G243975
TU276844 other upstream 317514 2394598 ~ 2396482 (+) True CI01000057_02395285_02396439
TU276421 other upstream 1755625 956063 ~ 958371 (+) True G243558
TU278389 other downstream 372898 3087096 ~ 3292562 (+) True G245231
TU278566 other downstream 823371 3537569 ~ 3538442 (+) True G245401
TU278506 other downstream 1127830 3842028 ~ 3844691 (+) True CI01000057_03842028_03844033
TU278663 other downstream 1495699 4209897 ~ 4212081 (+) True G245486
TU278934 other downstream 2384487 5098685 ~ 5101450 (+) False G245725

Expression Profile