RNA id: TU276942


Basic Information

Item Value
RNA id TU276942
length 248
lncRNA type antisense_over
GC content 0.47
exon number 1
gene id G244001
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 2719924 ~ 2720171 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTGATTTGTGTCTGACCAGGTTCACCTCCCCATAGCTCCCCTTCCCCACAACTCTAACGAATAAGTAACTGTCCATGATCCTCCTTCCAGAGATGCTGTCTGTATCACATAGCGAGTGATTTTAAGCCCCTCCGCGGGAGTTAAAATACAAGTAAGCGCGTTAATCTCAATGCATCGACGGTGATTTGTCTGTTTCAAACTTGTTTTTGGTGACACAGGGCGCAGGAAACAGACAAGCACAGCTTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU276941 lncRNA upstream 1133 2718541 ~ 2718791 (+) True G244000
TU276991 lncRNA upstream 3663 2715459 ~ 2716261 (+) True G244047
TU276989 lncRNA upstream 5310 2714326 ~ 2714614 (+) True G244046
TU276988 lncRNA upstream 5726 2713996 ~ 2714198 (+) True G244045
TU276987 lncRNA upstream 6450 2713054 ~ 2713474 (+) True G244044
TU276951 lncRNA downstream 18186 2738357 ~ 2743207 (+) True G244010
TU276953 lncRNA downstream 41412 2761583 ~ 2772925 (+) True G244012
TU277006 lncRNA downstream 98139 2818310 ~ 2819171 (+) True G244061
TU277017 lncRNA downstream 111179 2831350 ~ 2833300 (+) True G244068
TU277018 lncRNA downstream 115637 2835808 ~ 2836052 (+) True G244069
CI01000057_02707814_02708251.mRNA mRNA upstream 11550 2707814 ~ 2708374 (+) True CI01000057_02707814_02708251
CI01000057_02693930_02700711.mRNA mRNA upstream 19213 2693930 ~ 2700711 (+) True CI01000057_02693930_02700711
CI01000057_02618561_02619733.mRNA mRNA upstream 100153 2618420 ~ 2619771 (+) True CI01000057_02618561_02619733
CI01000057_02548444_02558549.mRNA mRNA upstream 160232 2547895 ~ 2559692 (+) True CI01000057_02548444_02558549
CI01000057_02416295_02420310.mRNA mRNA upstream 299382 2416295 ~ 2420542 (+) True CI01000057_02416295_02420310
CI01000057_02758170_02782493.mRNA mRNA downstream 37999 2758170 ~ 2782566 (+) True CI01000057_02758170_02782493
CI01000057_02794112_02799150.mRNA mRNA downstream 73820 2793991 ~ 2799153 (+) True CI01000057_02794112_02799150
CI01000057_02884788_02888727.mRNA mRNA downstream 163910 2884081 ~ 2888805 (+) True CI01000057_02884788_02888727
CI01000057_03326630_03330891.mRNA mRNA downstream 604548 3324719 ~ 3331089 (+) True CI01000057_03326630_03330891
CI01000057_03496993_03600733.mRNA mRNA downstream 776822 3496993 ~ 3600733 (+) True CI01000057_03496993_03600733
TU276930 other upstream 67364 2635237 ~ 2652560 (+) False G243991
TU276911 other upstream 143072 2576453 ~ 2576852 (+) False G243975
TU276910 other upstream 143072 2576470 ~ 2576852 (+) True G243975
TU276844 other upstream 323442 2394598 ~ 2396482 (+) True CI01000057_02395285_02396439
TU276421 other upstream 1761553 956063 ~ 958371 (+) True G243558
TU278389 other downstream 366925 3087096 ~ 3292562 (+) True G245231
TU278566 other downstream 817398 3537569 ~ 3538442 (+) True G245401
TU278506 other downstream 1121857 3842028 ~ 3844691 (+) True CI01000057_03842028_03844033
TU278663 other downstream 1489726 4209897 ~ 4212081 (+) True G245486
TU278934 other downstream 2378514 5098685 ~ 5101450 (+) False G245725

Expression Profile