RNA id: TCONS_00018527


Basic Information

Item Value
RNA id TCONS_00018527
length 1022
RNA type mRNA
GC content 0.39
exon number 2
gene id XLOC_009428
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 37639184 ~ 37645814 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACTGTGACTGGAAACTCAACAGATGAGAGCACTGTGCAGAACAAGGGATTTATGATCTTTCTTATCTGCGTTTCATTGTCACTATCATAGTGGGTCTCATTGGTAATGGGCTGGTCATATTTCTGACCGGCTGCAGAATGAAGACGAACGTCAACTCCATTTGGTTTCTGAATTTGGCGATTGCAGACTTCATCTTCATTTTATCTTCAATCACAGGTGTTTTCCTAAGTTTGAGCAAGCAGCGCAGAGACTTCATGATCTACTTTTTCTCCATCACAGCATCACTAAACCAGTTTGCATTATGTTTCTTGTAGTCATCAGTCTGGATCGATGCCTGCGCACATGGATGACTGTTTGGGCTCAAAATAACAGAACTCTGCGTAAAGCCAGAATCATCTGCATGATCGTCTGGGTTACATCCATCGGCTACATTTTACCTTTCTTCGAAGTTTTTGAGGTTACAGATACATTTCTTGACCCATATCAATTTCTATTGCTCTTTCTCATCCCCTTCCTGATTATTGCATCTTCATACATCGCTATTGGTGTAAAAATCAAACGCCTCAAAATGGGGAAGCAGCTCAGGTCATACAGACTCATTATAACTGTAATCCTGACTTTCTTCATCTGTTCATTTCCATTCCATGTTTGCTGGTTTTGGATGGTAAGGGCAGAAAATAATAATTGGACTCTCACTGATCAATTTTGGGTGCTATTTGGTTTTACTCTCTACCTGATTTATCTTAACAGCTGTCTGAACCCATTTCTCTATGTGTTCATGTGTAATGATTATAAGAAGAAGCTGAAACAGTCTCTGGTGCTGGTGCTGGAGACGGCGTTTGCTGAAGATCATCTGGACAATAACGAAATGAGACAGACACAAAATGataaacaggcaaaacaaacCACACTTGAATTGCTAGAAATGTAGAAAACCTTCAAAGGTTTGTGAACATTGTTGATATTGCATATAATCAGTCTTCATAATCAGTCAATAGTCTTTATTCAGCATCATTTTCT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000157060

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018519 lncRNA downstream 374919 37259354 ~ 37264265 (-) True XLOC_009422
TCONS_00018840 lncRNA downstream 854411 36784479 ~ 36784773 (-) True XLOC_009419
TCONS_00019218 lncRNA downstream 1135995 36500206 ~ 36503189 (-) True XLOC_009416
TCONS_00018839 lncRNA downstream 1201338 36421591 ~ 36437846 (-) True XLOC_009415
TCONS_00018510 lncRNA downstream 1269498 36365724 ~ 36369686 (-) True XLOC_009414
TCONS_00019219 lncRNA upstream 85241 37731055 ~ 37733875 (-) True XLOC_009433
TCONS_00018545 lncRNA upstream 181571 37827385 ~ 37829157 (-) True XLOC_009441
TCONS_00018553 lncRNA upstream 230902 37876716 ~ 37880887 (-) False XLOC_009444
TCONS_00018552 lncRNA upstream 230902 37876716 ~ 37880887 (-) True XLOC_009444
TCONS_00019220 lncRNA upstream 650343 38296157 ~ 38297734 (-) True XLOC_009453
TCONS_00018526 mRNA downstream 19017 37619004 ~ 37620167 (-) True XLOC_009427
TCONS_00018525 mRNA downstream 28750 37608742 ~ 37610434 (-) True XLOC_009426
TCONS_00018524 mRNA downstream 49584 37562582 ~ 37589600 (-) True XLOC_009425
TCONS_00018522 mRNA downstream 95345 37457009 ~ 37543839 (-) False XLOC_009424
TCONS_00018523 mRNA downstream 95593 37460783 ~ 37543591 (-) True XLOC_009424
TCONS_00018528 mRNA upstream 3454 37649268 ~ 37651161 (-) False XLOC_009429
TCONS_00018529 mRNA upstream 3475 37649289 ~ 37674120 (-) False XLOC_009429
TCONS_00018530 mRNA upstream 26059 37671873 ~ 37673733 (-) True XLOC_009429
TCONS_00018531 mRNA upstream 36589 37682403 ~ 37683768 (-) True XLOC_009430
TCONS_00018532 mRNA upstream 61455 37707269 ~ 37719679 (-) False XLOC_009431
TCONS_00018517 other downstream 764818 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018513 other downstream 1105937 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018488 other downstream 2426947 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018481 other downstream 2526398 35095205 ~ 35112786 (-) False XLOC_009398
TCONS_00018452 other downstream 3359649 34279421 ~ 34279535 (-) True XLOC_009383
TCONS_00018535 other upstream 82020 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018590 other upstream 2423197 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018622 other upstream 3747587 41393401 ~ 41396073 (-) True XLOC_009478
TCONS_00018633 other upstream 3883446 41529260 ~ 41543440 (-) True XLOC_009482
TCONS_00018660 other upstream 4631859 42277673 ~ 42283815 (-) True XLOC_009502

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000352_00248375_00249388.mRNA True 4057 mRNA 0.34 1 CI01000352 248053 ~ 252109 (-)