RNA id: TCONS_00021791


Basic Information

Item Value
RNA id TCONS_00021791
length 1221
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_010545
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 14421800 ~ 14443389 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTACGCATGCGCGTGAGAGTCGTTTGTTGGATCAGGTTTAAATTCCAGCGCAGCAATGGCAGAGCTCCTCCGAAACATCATATTCAGGCGATTTTCCTTCATCAAAGTTATAGGCCATTGGAAAACCACACAGCTACAATGAAGATGGGAATCCTTGAAACAGTTAGCATCAGGAGCATGGTGAAGTTTAAGAGCCCTGTCAACTGTGCTGAATGTCTGCTGTCCTGGAAGAGGAGATGGTGCTCGACAATAGGAGGCTTTATCAATGCATCGTTTGTGCTTTTGGATTATAGTATCTACTCAACCTGGAATACAATGACTAAATAGGTTTacatggtaaatatttgaaacagaTGCAGCTTTATGTGCTTGAAGTTCctcttgaagattttttttttacttttcttgaaactttgtgagtttttttttctgttctggaaTCATCTGTGTCAACTGGGTAAAGTAACCCATTGTTTAGATTTAATGGTGCTTTTGacgattttaatattcatttattaattttccttcagcttagtcccctgtttatcagggggagccacagcggaatgaaccgttcattgtttatatgcaaatatattagatgtttaatgttaatgaatgggtttaaccattaaaaatgtgatttcataAGTTCAGATTATCTTTTGTAGAATGGAAGTATTCAGGTGACAACACTAAACAATGGTTAAAGTAACCTCACAAAAATACTCacattttatgctgtttttttattttttttatatatatatatatttttttttgcagatatttGGAATATATATTAAGTACACTTCAGCTCCATGTATTGACCTTTTTCCTCACGtacgagcaggcgcagccatttgaatcttttaggCTGGAGAtttccgctctcattcacttcctttgatttttagatgttaaaaaactgtttgttttgatgcttgatgttgcaaactgatattttcttaatatattattctgctttgtctgtagagtcataaacacactagtttgtagagcaagtagtttgtctGTTTTCCGCTGTttaatattcctagtcatttctcccttaGGGCACTGAATCAGATGTTCGAAAACAAATCGGAAAAACTTCCGCCTTAAAGAATGAGGTCCATATTAGGAGAAATAAAATGCTAGAATTTATACGGTATACTTTGTtgaaatgtgtaatgtatttgttattcTAAAGTACTTTTA

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0061028 establishment of endothelial barrier biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0005840 ribosome cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020678 lncRNA downstream 2617 14431515 ~ 14433657 (-) False XLOC_010545
TCONS_00021790 lncRNA downstream 2618 14426860 ~ 14433656 (-) False XLOC_010545
TCONS_00020676 lncRNA downstream 7306 14421800 ~ 14428968 (-) False XLOC_010545
TCONS_00020677 lncRNA downstream 7306 14426449 ~ 14428968 (-) False XLOC_010545
TCONS_00021789 lncRNA downstream 12076 14422154 ~ 14424198 (-) False XLOC_010545
TCONS_00020687 lncRNA upstream 1265007 15708204 ~ 15709144 (-) True XLOC_010551
TCONS_00020688 lncRNA upstream 1335962 15779159 ~ 15780407 (-) True XLOC_010552
TCONS_00021792 lncRNA upstream 1343040 15786237 ~ 15786804 (-) True XLOC_010553
TCONS_00022134 lncRNA upstream 1823359 16266556 ~ 16270435 (-) True XLOC_010562
TCONS_00020702 lncRNA upstream 2021997 16465194 ~ 16470842 (-) True XLOC_010564
TCONS_00020673 mRNA downstream 39271 14383479 ~ 14397003 (-) False XLOC_010543
TCONS_00020672 mRNA downstream 82707 14280496 ~ 14353567 (-) True XLOC_010542
TCONS_00020671 mRNA downstream 103713 14276364 ~ 14332561 (-) False XLOC_010542
TCONS_00020670 mRNA downstream 103713 14276364 ~ 14332561 (-) False XLOC_010542
TCONS_00020669 mRNA downstream 187382 14231406 ~ 14248892 (-) True XLOC_010541
TCONS_00020681 mRNA upstream 85177 14528374 ~ 14534724 (-) False XLOC_010546
TCONS_00020682 mRNA upstream 85359 14528556 ~ 14552199 (-) True XLOC_010546
TCONS_00020683 mRNA upstream 128811 14572008 ~ 14587332 (-) True XLOC_010547
TCONS_00020684 mRNA upstream 609316 15052513 ~ 15097513 (-) True XLOC_010548
TCONS_00020685 mRNA upstream 721786 15164983 ~ 15263099 (-) True XLOC_010549
TCONS_00020674 other downstream 39575 14385320 ~ 14396699 (-) True XLOC_010543
TCONS_00020665 other downstream 477389 13957756 ~ 13958885 (-) True XLOC_010535
TCONS_00020657 other downstream 618334 13813970 ~ 13817940 (-) True XLOC_010529
TCONS_00020651 other downstream 765055 13668166 ~ 13671219 (-) True XLOC_010526
TCONS_00020641 other downstream 893814 13522299 ~ 13542460 (-) False XLOC_010519
TCONS_00020689 other upstream 1370309 15813506 ~ 15814501 (-) True XLOC_010554
TCONS_00020706 other upstream 2130217 16573414 ~ 16573530 (-) True XLOC_010567
TCONS_00020716 other upstream 2234511 16677708 ~ 16692267 (-) True XLOC_010571
TCONS_00020722 other upstream 2676867 17120064 ~ 17120186 (-) True XLOC_010576
TCONS_00020724 other upstream 2678801 17121998 ~ 17129466 (-) False XLOC_010577

Expression Profile

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