RNA id: TU799760


Basic Information

Item Value
RNA id TU799760
length 229
lncRNA type antisense_over
GC content 0.35
exon number 1
gene id G679069
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 1765310 ~ 1765538 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTAGAAATGCTTTGAACAACTAGTTACTATAGTTCATAACATAATAATATACATCATACACCTTGCTATATTGCTAAATCTATCCGATTTTTCATATCAACGGAAAAATATTCTCTTGAGACTCCCCGCTTCAGAGCGGTAATAGTTAATGATATGCTAAAGCACGCCGGCACGTTGATGTGATTGGTTAAGTAGTTTGTGACATCAGAAACAATAGCGATTGCAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU799752 lncRNA upstream 29549 1735417 ~ 1735761 (+) True G679064
TU799620 lncRNA upstream 31593 1727161 ~ 1733717 (+) True G678942
TU799627 lncRNA upstream 57691 1706515 ~ 1707619 (+) True G678945
TU799629 lncRNA upstream 152763 1518353 ~ 1612547 (+) False G678946
TU799634 lncRNA upstream 172263 1591172 ~ 1593047 (+) True G678948
TU799740 lncRNA downstream 11172 1776710 ~ 1777125 (+) True G679052
TU799763 lncRNA downstream 13052 1778590 ~ 1779698 (+) True G679072
TU799770 lncRNA downstream 37867 1803405 ~ 1808055 (+) True G679077
TU799774 lncRNA downstream 43344 1808882 ~ 1809140 (+) True G679080
TU799857 lncRNA downstream 265200 2030738 ~ 2031031 (+) True G679160
CI01180000_01747067_01755038.mRNA mRNA upstream 10053 1747067 ~ 1755257 (+) True CI01180000_01747067_01755038
CI01180000_01576739_01578505.mRNA mRNA upstream 185904 1576739 ~ 1579406 (+) True CI01180000_01576739_01578505
CI01180000_01542059_01545609.mRNA mRNA upstream 219230 1542059 ~ 1546080 (+) True CI01180000_01542059_01545609
CI01180000_01492241_01493781.mRNA mRNA upstream 270864 1491671 ~ 1494446 (+) True CI01180000_01492241_01493781
CI01180000_01380859_01385445.mRNA mRNA upstream 379527 1380701 ~ 1385783 (+) True CI01180000_01380859_01385445
CI01180000_01828938_01830221.mRNA mRNA downstream 63400 1828938 ~ 1830814 (+) True CI01180000_01828938_01830221
CI01180000_01832263_01834405.mRNA mRNA downstream 66475 1832013 ~ 1834999 (+) True CI01180000_01832263_01834405
CI01180000_01865632_01870994.mRNA mRNA downstream 99971 1865509 ~ 1871089 (+) True CI01180000_01865632_01870994
CI01180000_01915282_01926129.mRNA mRNA downstream 149354 1914892 ~ 1926269 (+) True CI01180000_01915282_01926129
CI01180000_01942458_01949580.mRNA mRNA downstream 176589 1942127 ~ 1950647 (+) True CI01180000_01942458_01949580
TU799630 other upstream 209159 1518353 ~ 1556151 (+) True G678946
TU799296 other upstream 609638 1149551 ~ 1155672 (+) True G678637
TU799410 other upstream 699219 1059843 ~ 1066091 (+) True G678751
TU799069 other upstream 1613658 147934 ~ 151652 (+) True G678440
TU799769 other downstream 29632 1795170 ~ 1799433 (+) True G679076
TU800043 other downstream 623329 2388867 ~ 2397360 (+) True G679324
TU801024 other downstream 924224 2693355 ~ 2694234 (+) True G680192
TU801022 other downstream 928869 2694407 ~ 2695436 (+) True G680192
TU801631 other downstream 1787739 3553277 ~ 3563250 (+) False G680723

Expression Profile