RNA id: TU805438


Basic Information

Item Value
RNA id TU805438
length 912
lncRNA type antisense_over
GC content 0.38
exon number 1
gene id G684158
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 7869391 ~ 7870302 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGGCACAGTGCAGACATTCAAAAACTGTTAACTGTTTATAAATGTGATGGAAATTTTGAACTAATTAATAATGAACTAACATTTCTTTTCTTCTACAGGCCTAATAAGCTAACTTTGAAATAGAGAAATAGTCACTAGGAGTGAGTGTTGTAACAAGTGGAAAAATTCTGCTGTGCTGGCTAGACAGCATCCTTCTAAGGATCAAAAAATAGTCTTTGAAAAATTGTTTTAACCTATTGAGTAATCTGAACTATTAACCCGGTGATATTTTTTGATGATCTTGTGATTCAGTTGTTCTAATCTAAATTTACTCCACCAGTAAGAGGGACAGAGGAACTGAGATGTTTTTCTTAAATCTGAACCAATCATATTAAGACTGATGATAATGAGTAATAGATCATGACATACTGACTGTGAAATGTACCTGAAATCCTATAAAACCTGCTGTATTTCTTTGTTCGGAGAGAGATTCTCTGGAATTGATGAGAACTCTCCCGGCCGTGATTAAAGCTTTAAAGGACAAAAACTGGAGTCTCTGGTTATTGCTGCAGCAAGTCAGGTTAGGGAACACTAGGTTTTTGAGGGTCAAGACGTTGACCGAGATATTATTGAGTGTCGATTTGGAGACGCTCCGAGTACTATTGAGTGTCGACTGGAGACGCTCCGAAAGATCAGGAAATTTATTGAGTGTTGACTGGAGACGCTCGGGTGTCGATTAGGAGACGCCCCAGGAACAGGTAACTTAAGTCAGGTGCATTTTGGAAAATCTACCACAATAAACAAGACAATTGATTTCCAAACTTATTTGAAGCTAAAATTGAACAAATCTTTTTGTGAAGCTCAAACACACATTTTTAATTCCATATGAGCACCTCCACCACTAGTTTTGAGTCTCACCCTCACTGTGATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU805432 lncRNA downstream 29578 7839608 ~ 7839813 (-) True G684152
TU805430 lncRNA downstream 34728 7834373 ~ 7834663 (-) True G684150
TU805427 lncRNA downstream 36203 7803000 ~ 7833188 (-) True G684147
TU805414 lncRNA downstream 66409 7731949 ~ 7802982 (-) True G684134
TU805408 lncRNA downstream 241290 7627876 ~ 7628101 (-) True G684128
TU805439 lncRNA upstream 139 7870441 ~ 7870731 (-) True G684159
TU805444 lncRNA upstream 1922 7872224 ~ 7872533 (-) True G684163
TU805446 lncRNA upstream 8878 7879180 ~ 7879409 (-) True G684165
TU805449 lncRNA upstream 16431 7886733 ~ 7886965 (-) True G684168
TU805452 lncRNA upstream 20119 7890421 ~ 7890644 (-) True G684171
CI01180000_07713320_07727939.mRNA mRNA downstream 141191 7712374 ~ 7728200 (-) True CI01180000_07713320_07727939
CI01180000_07696310_07709917.mRNA mRNA downstream 159474 7696310 ~ 7709917 (-) True CI01180000_07696310_07709917
CI01180000_07691853_07694359.mRNA mRNA downstream 175026 7691756 ~ 7694365 (-) True CI01180000_07691853_07694359
CI01180000_07664300_07675535.mRNA mRNA downstream 193856 7663854 ~ 7675535 (-) True CI01180000_07664300_07675535
CI01180000_07634809_07642632.mRNA mRNA downstream 226372 7633985 ~ 7643019 (-) True CI01180000_07634809_07642632
CI01180000_07935855_07937319.mRNA mRNA upstream 65411 7935713 ~ 7937577 (-) True CI01180000_07935855_07937319
CI01180000_07958912_07969452.mRNA mRNA upstream 88437 7958739 ~ 7969452 (-) True CI01180000_07958912_07969452
CI01180000_07995410_08004464.mRNA mRNA upstream 124885 7995187 ~ 8004777 (-) True CI01180000_07995410_08004464
CI01180000_08007547_08008834.mRNA mRNA upstream 136433 8006735 ~ 8008856 (-) True CI01180000_08007547_08008834
CI01180000_08123227_08149912.mRNA mRNA upstream 252798 8123100 ~ 8149912 (-) True CI01180000_08123227_08149912
TU805357 other downstream 286588 7579404 ~ 7582803 (-) True G684080
TU805347 other downstream 343737 7506890 ~ 7525654 (-) True G684071
TU805291 other downstream 456259 7403147 ~ 7413132 (-) False G684018
TU805292 other downstream 456259 7403984 ~ 7413132 (-) True G684018
TU804922 other downstream 1106547 6762075 ~ 6762844 (-) True G683673
TU805466 other upstream 40459 7910761 ~ 7911208 (-) False G684182
TU805835 other upstream 852391 8722693 ~ 8723867 (-) True G684493
TU806323 other upstream 2028122 9898424 ~ 9901388 (-) True G684929
TU807544 other upstream 3471314 11341616 ~ 11343496 (-) True G686052

Expression Profile