RNA id: CI01180000_07691853_07694359.mRNA


Basic Information

Item Value
RNA id CI01180000_07691853_07694359.mRNA
length 577
RNA type mRNA
GC content 0.51
exon number 3
gene id CI01180000_07691853_07694359
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 7691756 ~ 7694365 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACCAATGTCACACGCTCATCGGCTTTGCGTCATCGGAAAGCGACGTTTGATATTTTTCTTCTATTGTTTCAATGTCAATGAACTGAGCTCATTTGCGCCTCCTGCAGTGTTGGAGGAGACACATCACATAAGAAAAGCACGAAAACGACACTACCCCAAACGATTGGGAGAGTGTCAGTTTAATAGCACGCGCGCGCTCCCTCAAACAGCCGCGCGCACGTGCACACTCGCTCTCACTGGTCAGCGGGAACGCGCCTCGGGTCCCAGTCAGTCAGAACCGACCCGAGTCTCGAGCGGAATAGTGACGGACAGAAACGGTGCCAATCATTGTCTTCATCTGCAGAATATTAAGCAAGTTGAAGGGAAGCAAGTTGATCTTGATTCAGCTGTGGAGTTGCTGCTGACATGGGGACACCAGGATCAGGACGAAAACGGGCCCCGATTAAAGACCGTTTCTCAGCGGAGGATGAGGCTCTGAGCAGCATCGCCAGAGAGGTAAGAGGTGTTCGCCTGTGACCCCTGTTTATTTCACTGATGTCATCTTGTGGCTGGTGGTTTCCTGCAACCACAATAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU805408 lncRNA downstream 63655 7627876 ~ 7628101 (-) True G684128
TU805356 lncRNA downstream 159229 7531489 ~ 7532527 (-) True G684079
TU805328 lncRNA downstream 306292 7380701 ~ 7385464 (-) True G684054
TU805323 lncRNA downstream 342516 7348959 ~ 7349240 (-) True G684049
TU805294 lncRNA downstream 358607 7328754 ~ 7333149 (-) True G684020
TU805414 lncRNA upstream 37584 7731949 ~ 7802982 (-) True G684134
TU805427 lncRNA upstream 108635 7803000 ~ 7833188 (-) True G684147
TU805430 lncRNA upstream 140008 7834373 ~ 7834663 (-) True G684150
TU805432 lncRNA upstream 145243 7839608 ~ 7839813 (-) True G684152
TU805438 lncRNA upstream 175026 7869391 ~ 7870302 (-) True G684158
CI01180000_07664300_07675535.mRNA mRNA downstream 16221 7663854 ~ 7675535 (-) True CI01180000_07664300_07675535
CI01180000_07634809_07642632.mRNA mRNA downstream 48737 7633985 ~ 7643019 (-) True CI01180000_07634809_07642632
CI01180000_07631328_07632833.mRNA mRNA downstream 58923 7631155 ~ 7632833 (-) True CI01180000_07631328_07632833
CI01180000_07598849_07621310.mRNA mRNA downstream 70446 7598233 ~ 7621310 (-) True CI01180000_07598849_07621310
CI01180000_07536722_07547119.mRNA mRNA downstream 144637 7536472 ~ 7547119 (-) True CI01180000_07536722_07547119
CI01180000_07696310_07709917.mRNA mRNA upstream 1945 7696310 ~ 7709917 (-) True CI01180000_07696310_07709917
CI01180000_07713320_07727939.mRNA mRNA upstream 18009 7712374 ~ 7728200 (-) True CI01180000_07713320_07727939
CI01180000_07935855_07937319.mRNA mRNA upstream 241348 7935713 ~ 7937577 (-) True CI01180000_07935855_07937319
CI01180000_07958912_07969452.mRNA mRNA upstream 264374 7958739 ~ 7969452 (-) True CI01180000_07958912_07969452
CI01180000_07995410_08004464.mRNA mRNA upstream 300822 7995187 ~ 8004777 (-) True CI01180000_07995410_08004464
TU805357 other downstream 108953 7579404 ~ 7582803 (-) True G684080
TU805347 other downstream 166102 7506890 ~ 7525654 (-) True G684071
TU805291 other downstream 278624 7403147 ~ 7413132 (-) False G684018
TU805292 other downstream 278624 7403984 ~ 7413132 (-) True G684018
TU804922 other downstream 928912 6762075 ~ 6762844 (-) True G683673
TU805466 other upstream 216396 7910761 ~ 7911208 (-) False G684182
TU805835 other upstream 1028328 8722693 ~ 8723867 (-) True G684493
TU806323 other upstream 2204059 9898424 ~ 9901388 (-) True G684929
TU807544 other upstream 3647251 11341616 ~ 11343496 (-) True G686052

Expression Profile