RNA id: TU805449


Basic Information

Item Value
RNA id TU805449
length 233
lncRNA type intronic
GC content 0.36
exon number 1
gene id G684168
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 7886733 ~ 7886965 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAATTTCACAAGAGATCTCAACATCATCTCAGACTGTGCCCAGATGTCAAAGTCTGCAATCAAAATTAAACATGATTAAAATATTTCTCATCCAAATGTTCTGAGCTGCTATCTACATTCATTTTAAAGTCAGCATGAAATGGAAGCTGCGATAGTGAAGTATATCCGAATGAAACGGCTTCTCAAACAAGAAAAAATGTAGGGCAGAACTTGATTTGACCATGGGGAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU805446 lncRNA downstream 7324 7879180 ~ 7879409 (-) True G684165
TU805444 lncRNA downstream 14200 7872224 ~ 7872533 (-) True G684163
TU805439 lncRNA downstream 16002 7870441 ~ 7870731 (-) True G684159
TU805438 lncRNA downstream 16431 7869391 ~ 7870302 (-) True G684158
TU805432 lncRNA downstream 46920 7839608 ~ 7839813 (-) True G684152
TU805452 lncRNA upstream 3456 7890421 ~ 7890644 (-) True G684171
TU805457 lncRNA upstream 10922 7897887 ~ 7898091 (-) True G684176
TU805463 lncRNA upstream 23864 7910829 ~ 7911135 (-) True G684182
TU805471 lncRNA upstream 24598 7911563 ~ 7911775 (-) True G684183
TU805472 lncRNA upstream 25244 7912209 ~ 7912499 (-) True G684184
CI01180000_07713320_07727939.mRNA mRNA downstream 158533 7712374 ~ 7728200 (-) True CI01180000_07713320_07727939
CI01180000_07696310_07709917.mRNA mRNA downstream 176816 7696310 ~ 7709917 (-) True CI01180000_07696310_07709917
CI01180000_07691853_07694359.mRNA mRNA downstream 192368 7691756 ~ 7694365 (-) True CI01180000_07691853_07694359
CI01180000_07664300_07675535.mRNA mRNA downstream 211198 7663854 ~ 7675535 (-) True CI01180000_07664300_07675535
CI01180000_07634809_07642632.mRNA mRNA downstream 243714 7633985 ~ 7643019 (-) True CI01180000_07634809_07642632
CI01180000_07935855_07937319.mRNA mRNA upstream 48748 7935713 ~ 7937577 (-) True CI01180000_07935855_07937319
CI01180000_07958912_07969452.mRNA mRNA upstream 71774 7958739 ~ 7969452 (-) True CI01180000_07958912_07969452
CI01180000_07995410_08004464.mRNA mRNA upstream 108222 7995187 ~ 8004777 (-) True CI01180000_07995410_08004464
CI01180000_08007547_08008834.mRNA mRNA upstream 119770 8006735 ~ 8008856 (-) True CI01180000_08007547_08008834
CI01180000_08123227_08149912.mRNA mRNA upstream 236135 8123100 ~ 8149912 (-) True CI01180000_08123227_08149912
TU805357 other downstream 303930 7579404 ~ 7582803 (-) True G684080
TU805347 other downstream 361079 7506890 ~ 7525654 (-) True G684071
TU805291 other downstream 473601 7403147 ~ 7413132 (-) False G684018
TU805292 other downstream 473601 7403984 ~ 7413132 (-) True G684018
TU804922 other downstream 1123889 6762075 ~ 6762844 (-) True G683673
TU805466 other upstream 23796 7910761 ~ 7911208 (-) False G684182
TU805835 other upstream 835728 8722693 ~ 8723867 (-) True G684493
TU806323 other upstream 2011459 9898424 ~ 9901388 (-) True G684929
TU807544 other upstream 3454651 11341616 ~ 11343496 (-) True G686052

Expression Profile