RNA id: TCONS_00028887


Basic Information

Item Value
RNA id TCONS_00028887
length 621
RNA type mRNA
GC content 0.50
exon number 5
gene id XLOC_014613
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 11231083 ~ 11238721 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGATGAGGATACTCTGTATATTTGCTCTGGTTGCTGTGGTGGGTCTGGTGGCAGGAGAGGAGGGGGCTCGTCTTTTAGCCTCTAAGTCCCTGTTGAACCGTTATGCTGTGGAGGGACGAGATCTTACCCTGCAGTACAGCATCTACAATGTGGGCACCAGTGCTGCCCTGGAGGTTGAGCTGTCCGATGACTCTTTCCCTCCTGAAGATTTCGGCATTGTCTCAGGAATGCTGAATGTAAAGTGGGATCGCATTGCTCCTGCCAGTAATGTTTCTCACACAGTGGTTCTGCGGCCACTGAAAGCCGGATATTTCAACTTCACCTCTGCTTCTGTTAGCTACCTTGCGCAGGAAGGCGGACAGGTTGTGGTTGGTTACACAAGTGCTCCGGGTCAGGGAGGCATTCTGGCCCAGAGAGAGTTCGACAGACGCTTTTCTCCACATTACCTGGACTGGGCAGCTTTTGGCGTCATGACTCTTCCCTCCATTGGCATTCCTCTGCTCCTCTGGTACTCTAGTAAGAGAAAATACGACTCTCCGAAGAGCAAAAAGAACTGAGTTTGCCATTTActggacaaaaaaaacaaaacaaaaacagatcgGGGGTCATTACATGAATGCG

Function

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko03021 Transcription machinery
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-010413-1 Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human SSR2 (signal sequence receptor subunit 2).

Ensembl:

ensembl_id ENSDART00000163921

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030168 lncRNA downstream 3836 11219761 ~ 11227568 (-) True XLOC_014612
TCONS_00028870 lncRNA downstream 354574 10875733 ~ 10876830 (-) False XLOC_014603
TCONS_00028865 lncRNA downstream 366605 10859194 ~ 10864799 (-) False XLOC_014603
TCONS_00028866 lncRNA downstream 370955 10859122 ~ 10860449 (-) False XLOC_014603
TCONS_00028835 lncRNA downstream 912442 10313927 ~ 10318962 (-) True XLOC_014586
TCONS_00028909 lncRNA upstream 897666 12134791 ~ 12138739 (-) False XLOC_014624
TCONS_00028922 lncRNA upstream 1161419 12398544 ~ 12404316 (-) False XLOC_014631
TCONS_00030169 lncRNA upstream 1383801 12620926 ~ 12623962 (-) True XLOC_014632
TCONS_00030170 lncRNA upstream 1729894 12967019 ~ 13008216 (-) False XLOC_014635
TCONS_00030171 lncRNA upstream 1729894 12967019 ~ 13009415 (-) True XLOC_014635
TCONS_00028884 mRNA downstream 22580 11167852 ~ 11208824 (-) True XLOC_014610
TCONS_00028883 mRNA downstream 22622 11167289 ~ 11208782 (-) False XLOC_014610
TCONS_00028882 mRNA downstream 73745 11129318 ~ 11157659 (-) True XLOC_014609
TCONS_00028881 mRNA downstream 125089 11039517 ~ 11106315 (-) True XLOC_014608
TCONS_00028880 mRNA downstream 200131 11028097 ~ 11031273 (-) True XLOC_014607
TCONS_00028889 mRNA upstream 9929 11247054 ~ 11248982 (-) True XLOC_014614
TCONS_00028890 mRNA upstream 33722 11270847 ~ 11315224 (-) True XLOC_014615
TCONS_00028891 mRNA upstream 94697 11331822 ~ 11336782 (-) False XLOC_014616
TCONS_00028892 mRNA upstream 94698 11331823 ~ 11425592 (-) False XLOC_014616
TCONS_00028893 mRNA upstream 95734 11332859 ~ 11425542 (-) True XLOC_014616
TCONS_00028885 other downstream 38041 11193249 ~ 11193363 (-) True XLOC_014611
TCONS_00028867 other downstream 370938 10859217 ~ 10860466 (-) False XLOC_014603
TCONS_00028860 other downstream 500926 10692166 ~ 10730478 (-) False XLOC_014599
TCONS_00028862 other downstream 525929 10705459 ~ 10705475 (-) True XLOC_014600
TCONS_00028853 other downstream 584582 10636369 ~ 10646822 (-) False XLOC_014597
TCONS_00028897 other upstream 488371 11725496 ~ 11725631 (-) True XLOC_014620
TCONS_00028905 other upstream 809329 12046454 ~ 12046570 (-) True XLOC_014623
TCONS_00028907 other upstream 893920 12131045 ~ 12131180 (-) True XLOC_014625
TCONS_00028910 other upstream 897722 12134847 ~ 12145765 (-) True XLOC_014624
TCONS_00028911 other upstream 899611 12136736 ~ 12136871 (-) True XLOC_014626

Expression Profile

//