RNA id: TCONS_00028892


Basic Information

Item Value
RNA id TCONS_00028892
length 2469
RNA type mRNA
GC content 0.43
exon number 14
gene id XLOC_014616
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 11331822 ~ 11425592 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGAAATGTAACGTACGCCTGTGGGCTGGACCGTGAGTTGGAGAAAGGGAATGTCGATCGGTGAGAGATCGGTTACAGAGGCGGCCGGGAGCGTCAACAGAATGGTACAGCAACAGAAGAACCTTGAGGGGTACGTGGGATTTGCAAATCTCCCTAACCAAGTGTACAGAAAGTCAGTGAAGAGGGGCTTTGAGTTCACTCTCATGGTCGTCGGAGAATCAGGTTTGGGGAAGTCTACGCTCATCAACTCCCTCTTCCTGACAGATTTGTATTCTTCAGAGTATCCAGGCCCGTCTCACAGAATCAAGAAAACCGTTCAGGTGGAGCAATCCAAGGTGCTGATTAAAGAGGGTGGAGTTCAGCTGCTGCTCACCATCGTGGACACACCAGGCTTCGGAGATGCCGTGGATAACAGTAACTGCTGGCAGCCTGTCATCGATCACATCGACAGCAAATTTGAGGATTACCTTAACGCGGAGTCACGTGTCAATAGACGGCAGATGCCTGACAGTCGAGTGCACTGCTGTCTGTACTTCATCGCCCCCTCTGGTCATGGactgAAACCACTGGATATTGAGTTCATGAAACGGTTACATGAAAAAGTGAATATCATCCCGCTCATCGCAAAAGCAGACACACTGACTCCAGAGGAGTGCCAACAGTTCAAGAAGCAGATAATGAGAGAGATCCAGGAACATAAGATCAAAATCTATGAGTTCCCAGAAACTGATGACGAGGAGGAGAGCAAGCTAGTGAAGAAGATCAAGGATCGTCTGCCGCTGGCTGTGGTCGGCAGTAACACCATCATTGAGGTCAATGGGAAGCGTGTCCGGGGCAGGCAGTACCCCTGGGGTGTGGCAGAAGTGGAGAATGGGGAGCACTGTGACTTCACAATACTTCGAAACATGCTCATCAGAACTCACATGCAGGACCTGAAGGATGTGACCAACAATGTCCATTATGAGAACTATCGCAGTAGGAAACTGGCTGCTGTCACTTACAATGGTGTCGACAACAACAAGAACAAAGGTCAACTAACAAAacctGACACAGTTGAAGGCATGAGCCCTCTGGCACAGATGGAGGAGGAGAGGAGAGATCATGTGGCAAAGATGAAGAAGATGGAAATGGAGATGGAGCAGGTGTTCGAGATGAAGGTCAAGGAGAAGATCCAGAAACTCAAAGACTCTGAGGGAGAGCTGCAACGGCGTCATGAACAGATGAAGAAGAACCTGGAGGCGCAGCATAAGGAGCTAGAGGAGAAGAGACGTCAGTTCGAGGAGGAGAAGGCCAGCTGGGATGCCCAACAACGCATTCTGGAGCAGCAGAAACTGGACGCTTCCagGACCTTGgaaaagaacaaaaagaaaaagatcTTTTAAACCACTTGGACCATCACCGACATTCAAGTTGCCAACTATACCAGCCTGGAGCATCAGTCAGTCTGTCGACCaaactcattcatttatataaaagcccaatgattgtgttttttttgttttgttttttgctttagtTTTGTGCGGGGAGATGGAGAGCCTCTGTGTTGCCCCACTGACCTGGAAACACTCATTGCTGTCCCTCCATCATGCTCCGTTTCCACATTTAAAAATATCGGTTCATTTTTTGCCAGACCTCACACAAGCTGAAAGCGCTTGATCTGTAacgaataaatacatacaaacttCTCAGAGATACAGTATGCAATATTGTTTGAAACGACAGCCTCTTTAGGATCAGTTTGTAAAATTCCTTTCTGCCGAATGTTTGTTTAGTGTTTTTAGGTCACTTCCTCCTTTACAACTGAAATATTGATTGGCCACGTTAGTAAAAACCTAAAGGCTGAATCTTACCTCAGGCATTTCTGTCCTTTAAACAATGCATTTTGTGGCTTTTTTCCCCCTTCCTGAAATGTTAAGCTCTTCCaatatttgtgtaatttaaattatttagccatGGACCTTAGCCattcattaaatgtttttttttattttttattattgttattttgtcatgttttttcatATGATGTTCCAGTTCACTGCTTGCTGAAAGTTGTAGTTTATATTCATCTACAGAGACTTTATAAACGACTCATGATTTGTTCCTCCTACAAGGATGTGCTGTACAACATTATGCAAGTTTTACAAAAATGGAGGGTAATTCATGCATTATGAGGCTTTATTAAGTCATTTGTTGATGTCTATATTCTAGTGCTTAAAATGATTCCAGTTTTTGTCACGTAAACTGATAAAGGAGCAGTGAACTGACTTTTTTTTggccagttgttttgttttagttttttctcTATAGGCTGTGTGTCCCATCTGAGCTGGCCTTCTCCAATACCACACTTAGCTTTCGGCCATGTACTTCTGCAACCTCtttttatagttttgtttctctttattttgttttgctttttcatttttattgtacaAAGTCACATAATAAAACTGTGATGATGCC

Function

GO:

id name namespace
GO:0031105 septin complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1008 Predicted to enable GTP binding activity. Predicted to be located in several cellular components, including cleavage furrow; kinetochore; and midbody. Predicted to be integral component of membrane. Predicted to be part of septin complex. Is expressed in brain and otic vesicle. Orthologous to human SEPTIN7 (septin 7).

Ensembl:

ensembl_id ENSDART00000080762

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030168 lncRNA downstream 104255 11219761 ~ 11227568 (-) True XLOC_014612
TCONS_00028870 lncRNA downstream 454993 10875733 ~ 10876830 (-) False XLOC_014603
TCONS_00028865 lncRNA downstream 467024 10859194 ~ 10864799 (-) False XLOC_014603
TCONS_00028866 lncRNA downstream 471374 10859122 ~ 10860449 (-) False XLOC_014603
TCONS_00028835 lncRNA downstream 1012861 10313927 ~ 10318962 (-) True XLOC_014586
TCONS_00028909 lncRNA upstream 709199 12134791 ~ 12138739 (-) False XLOC_014624
TCONS_00028922 lncRNA upstream 972952 12398544 ~ 12404316 (-) False XLOC_014631
TCONS_00030169 lncRNA upstream 1195334 12620926 ~ 12623962 (-) True XLOC_014632
TCONS_00030170 lncRNA upstream 1541427 12967019 ~ 13008216 (-) False XLOC_014635
TCONS_00030171 lncRNA upstream 1541427 12967019 ~ 13009415 (-) True XLOC_014635
TCONS_00028890 mRNA downstream 16599 11270847 ~ 11315224 (-) True XLOC_014615
TCONS_00028889 mRNA downstream 82841 11247054 ~ 11248982 (-) True XLOC_014614
TCONS_00028886 mRNA downstream 93102 11231083 ~ 11238721 (-) False XLOC_014613
TCONS_00028894 mRNA upstream 3671 11429263 ~ 11431278 (-) True XLOC_014617
TCONS_00028895 mRNA upstream 83368 11508960 ~ 11546516 (-) True XLOC_014618
TCONS_00028896 mRNA upstream 207242 11632834 ~ 11846958 (-) True XLOC_014619
TCONS_00028898 mRNA upstream 472039 11897631 ~ 11950434 (-) False XLOC_014621
TCONS_00028899 mRNA upstream 472270 11897862 ~ 11949996 (-) False XLOC_014621
TCONS_00028885 other downstream 138460 11193249 ~ 11193363 (-) True XLOC_014611
TCONS_00028867 other downstream 471357 10859217 ~ 10860466 (-) False XLOC_014603
TCONS_00028860 other downstream 601345 10692166 ~ 10730478 (-) False XLOC_014599
TCONS_00028862 other downstream 626348 10705459 ~ 10705475 (-) True XLOC_014600
TCONS_00028853 other downstream 685001 10636369 ~ 10646822 (-) False XLOC_014597
TCONS_00028897 other upstream 299904 11725496 ~ 11725631 (-) True XLOC_014620
TCONS_00028905 other upstream 620862 12046454 ~ 12046570 (-) True XLOC_014623
TCONS_00028907 other upstream 705453 12131045 ~ 12131180 (-) True XLOC_014625
TCONS_00028910 other upstream 709255 12134847 ~ 12145765 (-) True XLOC_014624
TCONS_00028911 other upstream 711144 12136736 ~ 12136871 (-) True XLOC_014626

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00021694 True 2597 mRNA 0.41 14 CM030130.1 25803425 ~ 25832384 (+)