RNA id: TCONS_00029766


Basic Information

Item Value
RNA id TCONS_00029766
length 1303
lncRNA type antisense_over
GC content 0.37
exon number 6
gene id XLOC_014657
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 16026893 ~ 16031105 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCAGCTTCCTCCTTTTCAACTGCTTTCTAAATGGGTGAAGATGTTAACGTTCCCTGAAATGGGAGTTCAGTTTAACCACGTTGTTCCACCGCTAATCACAACTTTCTGTCCAGAGGTTGGATGATGCAGAGCAAGCTGAATGTGTGCACCTGAAAGAAACCCCATTATGATCTTCCTTGATGGGGGCTGAATGACCAACCTTGAAgGTTAAATTGTGCAGAACAAGCTGAATGTTTCGACATGGAGACCTCCTGTCACGATGCTTCTGGATGAGCTAAATGAACAAACATGAAAGCCAGATGCAGTCAGTGCAGTGCTTTTCAAGTGGCCACAGTAAGCCATTGTTCTGGTAAGTTCAACATTAATTTTAGTGTTGCACGTATGCGAGAATCAGTGCTCCTAATTTGCGCTTCATTCTCTAACTACGTGCTAAATTAATGGGGAGCCTTTGACCGCCTGTCTGCTGGTGTCTGTGTCGGTCACTCTACTGTCCAACATAAACCAACTGGTTGCGCATGATGACTCCCCATCTGGGTCCAAGATTAACCCCTATAGTTTAAATTTGTACCTAAGATTGAAGCTTTAGCTCATTTTAAGGTTATTTACACTCCCATtacttaaacttgtaaaattcacttaagcttttattattattattttttttttagaataactTAACCGTTAAAATACTTtctgccatttttattttatcagaCATGTGGAGGGTGAGCTTGTTTTGAATTTTGTGACTGGAACACGATGATGTTACAAATGTATaaattgaatatatttttgtgcTTAGGTGCTGGTTAACTGTAGGAATGGTGGTACAGTCTGCTTAAGTAGGAACTTGACTGGTGCGGTTGTCTCAACTTTAACTGGTTTACatgtgcaactttttttttttttccccccccaATAAAcccttttaaataaaagtattttaaaactaTTCTAGACTGCTGTTTTGTTTGCAAATGATACTAAAGTAATATTGGaccataaatttaaaacaatcaatTATTTTCCACCAATATGTATTTCATGTtaaataagtttgactttatgCTGTAAAATAACAAAGATACATGACAACTTTAGTGTAACTCCATACCATTTTATTACTGGAGACAGGTGTACAACAAACCAGCTGGTACTTGACAAACTCCATCACAATGAAGAAAATCTATTAACTTTCCCCCAATGGGATGTCAAACCTTATTGTCATTGCATACAAAAACGataaatttcataaaataaagctACTAATCTTCTGATGACCATTGACGCGACCACTTTTAA

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0007517 muscle organ development biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000469 cleavage involved in rRNA processing biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0000478 endonucleolytic cleavage involved in rRNA processing biological_process
GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0031167 rRNA methylation biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:0030688 preribosome, small subunit precursor cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044452 obsolete nucleolar part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0034511 U3 snoRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0140102 catalytic activity, acting on a rRNA molecular_function
GO:0008649 rRNA methyltransferase activity molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko04623 Cytosolic DNA-sensing pathway
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028947 lncRNA downstream 1836807 14188120 ~ 14190086 (-) True XLOC_014648
TCONS_00030177 lncRNA downstream 1960343 14062042 ~ 14066550 (-) True XLOC_014646
TCONS_00028942 lncRNA downstream 2093707 13928251 ~ 13933186 (-) True XLOC_014643
TCONS_00028940 lncRNA downstream 2103789 13919007 ~ 13923104 (-) True XLOC_014642
TCONS_00029759 lncRNA downstream 2570246 13454968 ~ 13456647 (-) True XLOC_014639
TCONS_00030188 lncRNA upstream 5250 16036012 ~ 16044582 (-) True XLOC_014661
TCONS_00028965 lncRNA upstream 398876 16429638 ~ 16433880 (-) False XLOC_014662
TCONS_00028966 lncRNA upstream 400978 16431740 ~ 16433484 (-) False XLOC_014662
TCONS_00028967 lncRNA upstream 401204 16431966 ~ 16432672 (-) False XLOC_014662
TCONS_00028968 lncRNA upstream 401204 16431966 ~ 16432907 (-) False XLOC_014662
TCONS_00028961 mRNA downstream 171466 15851226 ~ 15855427 (-) True XLOC_014656
TCONS_00028960 mRNA downstream 592080 15423057 ~ 15434813 (-) True XLOC_014655
TCONS_00028958 mRNA downstream 606175 15408363 ~ 15420718 (-) False XLOC_014654
TCONS_00028959 mRNA downstream 606215 15417372 ~ 15420678 (-) True XLOC_014654
TCONS_00028957 mRNA downstream 691106 15307902 ~ 15335787 (-) True XLOC_014653
TCONS_00028973 mRNA upstream 1174381 17205143 ~ 17210928 (-) False XLOC_014667
TCONS_00028974 mRNA upstream 1177253 17208015 ~ 17210760 (-) False XLOC_014667
TCONS_00028975 mRNA upstream 1177451 17208213 ~ 17208728 (-) False XLOC_014667
TCONS_00028977 mRNA upstream 1257767 17288529 ~ 17304866 (-) False XLOC_014670
TCONS_00028978 mRNA upstream 1261752 17292514 ~ 17303500 (-) False XLOC_014670
TCONS_00028954 other downstream 834247 15174843 ~ 15192646 (-) True XLOC_014651
TCONS_00028935 other downstream 2252424 13733168 ~ 13774469 (-) True XLOC_014640
TCONS_00028926 other downstream 3393630 12633149 ~ 12633263 (-) True XLOC_014634
TCONS_00028921 other downstream 3634135 12386297 ~ 12392758 (-) True XLOC_014630
TCONS_00028911 other downstream 3890022 12136736 ~ 12136871 (-) True XLOC_014626
TCONS_00028972 other upstream 968865 16999627 ~ 16999742 (-) True XLOC_014664
TCONS_00028976 other upstream 1177483 17208245 ~ 17210735 (-) True XLOC_014667
TCONS_00028989 other upstream 1487299 17518061 ~ 17658173 (-) False XLOC_014675
TCONS_00028991 other upstream 1487971 17518733 ~ 17526735 (-) True XLOC_014675
TCONS_00029018 other upstream 2386419 18417181 ~ 18418763 (-) False XLOC_014685

Expression Profile

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