RNA id: TU293005


Basic Information

Item Value
RNA id TU293005
length 267
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G257247
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 40808468 ~ 40808734 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctgaggattgattagaaactgTGTTttacttgtttggacgaagtttatttgtaacgtttgggattaattgtgtatgcattttgaacgagggaaaccggtggattattgaatgaagtgCTCCAACTAAACttacttttttgggatataaagaaggactttatcgaacaaaactaccatttgtgatgtagctgggaccctttggattgcaaacggaggaagatcttcaaagtccttatttattttatcactatttctgagtttcttgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU293004 lncRNA upstream 1464 40806716 ~ 40807004 (+) True G257246
TU292976 lncRNA upstream 21042 40787195 ~ 40787426 (+) True G257218
TU292405 lncRNA upstream 437762 40370492 ~ 40370706 (+) True G256675
TU292403 lncRNA upstream 439731 40368421 ~ 40368737 (+) True G256673
TU292401 lncRNA upstream 440599 40367525 ~ 40367869 (+) True G256671
TU293027 lncRNA downstream 12967 40821701 ~ 40822470 (+) True G257269
TU293028 lncRNA downstream 13844 40822578 ~ 40822788 (+) True G257270
TU293029 lncRNA downstream 14177 40822911 ~ 40823317 (+) True G257271
TU293056 lncRNA downstream 32307 40841041 ~ 40841275 (+) True G257298
TU293057 lncRNA downstream 33477 40842211 ~ 40842433 (+) True G257299
XM_036974097.1 mRNA upstream 105790 40461161 ~ 40702678 (+) True dnah7
XM_021596897.2 mRNA upstream 107013 40461161 ~ 40701455 (+) False dnah7
XM_021596895.2 mRNA upstream 355926 40440040 ~ 40452542 (+) False LOC110519969
XM_021596896.2 mRNA upstream 355926 40440040 ~ 40452542 (+) False LOC110519969
XM_036974093.1 mRNA upstream 1026064 39769831 ~ 39782404 (+) True asmtl
LOC118944668 mRNA downstream 49563 40858297 ~ 40861180 (+) True LOC118944668
XM_021596899.2 mRNA downstream 745737 41554471 ~ 41725755 (+) True LOC110519971
XM_021596901.2 mRNA downstream 931356 41740090 ~ 41767612 (+) True LOC110519972
XM_021596902.2 mRNA downstream 978219 41786953 ~ 41915322 (+) False spegb
XM_036974099.1 mRNA downstream 1033779 41842513 ~ 41915322 (+) True spegb
TU292451 other upstream 356288 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other upstream 356288 40440069 ~ 40452180 (+) True LOC110519969
TU290915 other upstream 1140380 39659059 ~ 39668088 (+) True LOC110519960
TU290310 other upstream 1963912 38843510 ~ 38844556 (+) True G254816
TU289899 other upstream 2207602 38600487 ~ 38600866 (+) True G254445
TU297744 other downstream 3443335 44252069 ~ 44252551 (+) True G261749
TU298041 other downstream 3711685 44520419 ~ 44525408 (+) True G262037
TU299672 other downstream 5030187 45838921 ~ 45839480 (+) True G263547
TU299841 other downstream 5125385 45934119 ~ 45934418 (+) True G263710
TU299866 other downstream 5266750 46075484 ~ 46079425 (+) True G263733

Expression Profile