RNA id: TCONS_00033167


Basic Information

Item Value
RNA id TCONS_00033167
length 652
RNA type mRNA
GC content 0.55
exon number 2
gene id XLOC_016992
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 57892666 ~ 57918314 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGGAAGCGCTGTTGCCTGTCTGCGTTGTTAGCTGAAGTGGTGTTTTTCTCCAGCGTCAGAGAGTGTGTTTATTCACTGTAAGATGAGCTGCTCGCTGCAGACGCAGCTTGGCTCCATCCTGGAGGTGCTGTTGAAGTCGGCTGCGTCGCAGATCGGGCAGCTGCTTCAGGAGGACGCGGCCGCGGTGCAGATGGAGATCCGCCGCAGAAACGAGGAGATCCGCAGCCTGAAGAGCCGCCTGTTGAACTGCGAGAGCCGGCTGGAGAAACTGACTGCTGCCCGCTGCTCTGTCGGCGTACAGGTGCACATCACCGACACCGGTGTGACGGCTCACGATCAGGAGACGCTCATGTTGACCAGTCCAATGATGAACGTCGTTTCAGAGGAGAAACCTCTTAATCCTCGTGCACCTGAGCTCCAATTACAGCCTCTTAAACGAGAAGATCCTGCGAGTCGAGCAGCTCCACATgcagaagaggaagaagaagaggaagagctcAGCGGTCTGGAGCTCCAGATGAAGATCGAGCAGGTGGAGGAGTTTGTAGACCGGAAACTCAGCATTCACGatggaaacttttatttttggagtCCGCAGAAAGAGCTTGGGCATCATCAGAGTCTAGCGGAGCCTGAATCACATGCACAGAG

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:1903706 regulation of hemopoiesis biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-672 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of hemopoiesis and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000132245

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033163 lncRNA downstream 61102 57830325 ~ 57837818 (-) True XLOC_016990
TCONS_00033162 lncRNA downstream 67779 57828710 ~ 57831141 (-) False XLOC_016990
TCONS_00034010 lncRNA downstream 87106 57801654 ~ 57811814 (-) True XLOC_016989
TCONS_00033430 lncRNA downstream 146016 57730336 ~ 57752904 (-) True XLOC_016988
TCONS_00034009 lncRNA downstream 312723 57581671 ~ 57586197 (-) True XLOC_016986
TCONS_00034011 lncRNA upstream 189891 58090321 ~ 58109158 (-) False XLOC_016997
TCONS_00033431 lncRNA upstream 190789 58091219 ~ 58109574 (-) False XLOC_016997
TCONS_00033432 lncRNA upstream 206744 58107174 ~ 58109574 (-) True XLOC_016997
TCONS_00033433 lncRNA upstream 286464 58186894 ~ 58201176 (-) False XLOC_017000
TCONS_00033434 lncRNA upstream 312119 58212549 ~ 58213192 (-) True XLOC_017001
TCONS_00033164 mRNA downstream 7416 57879347 ~ 57891504 (-) True XLOC_016991
TCONS_00033160 mRNA downstream 61082 57825432 ~ 57837838 (-) False XLOC_016990
TCONS_00033161 mRNA downstream 63937 57825561 ~ 57834983 (-) False XLOC_016990
TCONS_00033159 mRNA downstream 191881 57609291 ~ 57707039 (-) True XLOC_016987
TCONS_00033157 mRNA downstream 424940 57448301 ~ 57473980 (-) False XLOC_016984
TCONS_00033168 mRNA upstream 13060 57913490 ~ 57918314 (-) True XLOC_016992
TCONS_00033169 mRNA upstream 25088 57925518 ~ 57941037 (-) False XLOC_016993
TCONS_00033171 mRNA upstream 52809 57953239 ~ 57991041 (-) False XLOC_016994
TCONS_00033172 mRNA upstream 88972 57989402 ~ 57991638 (-) True XLOC_016994
TCONS_00033173 mRNA upstream 126066 58026496 ~ 58075414 (-) True XLOC_016995
TCONS_00033146 other downstream 611662 57268782 ~ 57287258 (-) False XLOC_016979
TCONS_00033145 other downstream 629762 57268781 ~ 57269158 (-) False XLOC_016979
TCONS_00033137 other downstream 795435 57103401 ~ 57103485 (-) True XLOC_016974
TCONS_00033134 other downstream 837127 57058078 ~ 57061793 (-) True XLOC_016972
TCONS_00033120 other downstream 1856290 56042512 ~ 56042630 (-) True XLOC_016962
TCONS_00033170 other upstream 40250 57940680 ~ 57941863 (-) True XLOC_016993
TCONS_00033188 other upstream 736246 58636676 ~ 58636792 (-) True XLOC_017010
TCONS_00033190 other upstream 967679 58868109 ~ 58869453 (-) True XLOC_017015
TCONS_00033196 other upstream 1137765 59038195 ~ 59038312 (-) True XLOC_017019
TCONS_00033197 other upstream 1201739 59102169 ~ 59102252 (-) True XLOC_017022

Expression Profile

//