RNA id: TCONS_00034938


Basic Information

Item Value
RNA id TCONS_00034938
length 4164
RNA type mRNA
GC content 0.54
exon number 28
gene id XLOC_017607
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 44582318 ~ 44792557 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGTGAACACCAGGAAGAGCTCGGAGCACAAGCCCAGCAGTCCCTTCATCTCGGGCCGGACGAGGTCGTCTCAGAGGAACAACCCAAACTTGGACGAGCACAACAGCCGTAAAGAGCCCAGCAGTGATGCTAACAGCAGTAGCCCGCGTTTGTCCCCGCCGCCCAAGCGGACACGCAGACAGACGCCACCAAGTTCTACTGATACTTCTCCAAGTCCCCAGAGTAAAGGCCAGAGAGGCTCTTGGACCATGTCCAAACACTGTACTAGGTTGTCCACTGGTGCCTTGCAGAATGGACACAccATAGGTCGAATGAGTCTGAGGGGTGATTCTACATCAGGCGGGGACCATGCTCGTATGAATGGTCATGTTGAACTCAAGAGAAGCCGCCGTGTCAGGAAATCCCAGTTTGAACACCTCAATCAGAGTTTACTTTTCGACCAACTAGTCAACAGTACGGCAGAAGCAGTTCTTCAAGAGATGGACAACATCAGCAGCATTCGGCAGAGTCGGGAAGTGGAGCGCCTCCGCATGTGGACGGACACTGAACTGGAAAACATGGACATGTACTCCCGCGTAAAAAGGAGGAAGTCTTTGCGGAGGAACACGTATGGAATGCAGTCCCATCACAAAGTCATGAGCAAATCAAAAGACCCTGAAGAGGAAGAAGGAACTGAAGagtCTAATGAGGAGGGAGAGGAGGATGAAGATGTGGaggctgatgatgatgatgaagacgaTGAAGGAGATGAGGCAGAAGAGGCCGGAGAGGAGAACGACAGACCGTATAACCTCAGGCAGCGGAAAACTGTGCAGCGATACGAAGCTCCCCCTATAGAGCCAGTGAACAGGAAGCAAAGTAAGGGATCTCTATTCGACACACACCGATCTCCTGCAAGAAGAAGCCATATTAGAATAAAGAAGCATGCCATTCACAGTAGTGAATCGACATCATCATCTGATGAAGAGCGTTTCGAGAGGCGGAAAAGCAAAAGCATGAGCCGAGCTCGTAACAGGTGTTTACCCATGAACCTGCGAGCAGAGGATCTGGCCAGTGGCGTGCTTCGAGACAGAGTAAAAGTGGGTGCCAGTTTGGCCGACGTGGATCCCATGAATCTGGACACTTCTGTGAAGTTTGACAGTGTTGGAGGTCTCACCCATCACATCCAGTCTTTGAAAGAGATGGTCGTCTTTCCTCTACTTTATCCACAAGTGTTTGAGAAGTTTAAGATTCAGCCCCCAAGAGGGTGTCTGTTCTATGGGCCTCCAGGAACTGGGAAGACGCTGGTGGCGAGGGCTTTAGCTAATGAATGCAGTCAGGGGGACAGGAAGGTTTCTTTCTTCATGCGGAAGGGCGCCGACTGCCTCAGCAAGTGGGTGGGGGAGTCTGAACGACAGCTCCGCCTGCTTTTTGACCAGGCATACCTCATGAGACCCTCCATCATCTTTTTTGATGAGATTGATGGCCTCGCTCCTGTTCGCTCCAGCAGGCAGGATCAAATTCACAGCTCCATAGTGTCAACATTACTGGCGTTGATGGATGGTTTGGACAGCCGGGGGGAGATAGTGGTCATCGGTGCTACAAACAGACTCGACTCTATCGACCCTGCACTCAGGAGGCCCGGACGCTTCGACCGGGAGTTTCTGTTCAACCTGCCAGATAAAAAGGCTCGAAAGCACATTCTAGAAATCCACACCAGGGACTGGAGCCCCAAACTAGCCGAGCCCTTCATAGATGAGCTAGCTGAGAGATGTGTTGGTTACTGTGGTGCCGACATTAAAGCACTTTGCACGGAGGCTGCGCTGGCGGCTCTGCGGCGGCGTTATCCTCAGATCTACGGCAGCAGTCAGCGCTATCAGCTGGACGTGGCCTCCATTGTTTTAGGGCCGCAGGACTTTGGTCGTGCCCTGCGCTCCATTGTACCTGCCGGCCAAAGAGCCCTCGCTCCACCTGGCCAGGCCCTTTCCTGTGTCCTAAAGCCTCTTCTGGAGCCTACGCTGAATCAAACACTGGCCTGCCTGACGCGAGTCTTCCCCCACGCAGAGCTCCTGCACAGGGAACACACACACGACAGTGACAATCATCTGTTGGTGGAGGACTCGTACAGTGAGGATGAGGAATGTCTTGGTGCTTCTTCCATTTATGAAACTCAGTCCGGATCGCCGAAGAAAGCAGCTTCCTGCACGACCCATAAACCCTTTCTCCATTTTACCACTTCTGCCTACCAGCAGCCCACCTCTTACCGGCCGCGGCTGCTGCTGACGGGACCCCAGGGTGCGGGGCAGAGCACACACCTGGCCCCCGCTCTGCTGCACCACCTGGAGAAGTTCACTGTGCATCGCCTCGACCTTCCCACACTTTACTCTGTCAGTGCCAAAACCCCAGAGGAGTCCTGCGCTCAGGTGTTTCGTGAGGCTCGGCGGTGTGTGCCCAGCATCATCTACATGCCTCACATCAGTGCCTGGTGGGAAGCCATCAGCGAGACGGTGAAGAGCAGCTTCCTCATGCTGCTGCAGGATGTGCCCTCGTTCACGCCGCTCCTCATCCTCGCCACAGCAGAGAGCGTCTACCAGCAGCTCCCTGATGAGCTAAAATGCATCTTCAGCCGTTCGTATGGAGAGGTGTTTTGTTTAAGCATGCCAGGAGAAGAAGCTCGCAGGAAATTCTTTTCAGACCTCATTTTGGTGCAGGCAGCCAAAGCGCCACCCCGCAGGAGAAAATCAGcGTGTGCTCTGGAGGTGCTGACCCTTTCTGAAGACCCCGGGCCTCGGCAGCTCTCAGCGGAGGAGCAGCGGCGACTGGAGGAGCAGGAGGAAAACACTTTGCGAGAGCTCCGACTCTTTCTCAGGGACGTCACAAAGCGGCTCGCCACTGACAAGCGCTTCCAGATCTTCAGCAAGCCTGTGGACATTGAAGAGGTGTCGGACTACCTCGAGGTTATCACACAGCCTATGGACTTGTCCGCCATCATGATGAAGATCGACAAACACAAGTACATGGTCGCCAAGGATTTTCTAGCAGACATTGATCTCATTTGCAGCAACGCGTTAGAGTACAATCCAGACAAAGACCCAGGAGATAAAATCATCCGCCACAGGGCCTGCAGTTTGAAGGACACTGCGCACGCCATGATCGCCTCTGAACTGGACCCCGAGTTTGACCGCATGTGCGAGGAGATCAAGGAGTCCCGCAGGAAGAGAGCCCCTCAGACAGCACCCCAGCCGCCCGTCACTCCAAGCACTGTGGCAACCAGGAAGCCGATGGGAGAGGAGGCGGGATTAAGCAGCTCTCAGGGTGATGGAGTGGACAAGCACTGCAGCAATAACATAAAGCGCAAATTCCGCCGGCGACCGATCTGGGGCCGAGGCATCATCCGAAAGAAAAAGAGCTATAAAAAGGAGGAAGCGGAGGAAGATGATGAACCCGAGGAGGAAGAGGGAGCTGAGGATTCGACAGTGATGGCACAAGGCGACGCTTGTCTCACCCTGGACGAGTCCTCCTGCGACACCATGGAGCTCCATCCTGAAAAACAGCCGCTCCAGGCCAATGGACACGTGCTCTCCACGGAGGAGGAGAACTCCTGCGAGCCCACGGCCGCTCGAGACGCTCAGGGTCAGGAGGAGGCTCCGTCAGAGGAGCCCACAGTGGCCCCGACAGTCCCCGCCCCTCAGGAGTGTGTGAATGGGAATGAATCTATGGACAGTGTGTACAGCGAGGCTCCTGATAAAGACACTATTAAAAGAGATGCACTTGAACAGAAACCAACAGAGCATAAAGAAGCTTCTGGCACAGAATGCAGTACTGGGGAGAATACGAGGACAGCGGAGGCAGTGGCATCTGATGGCGACCATGAAAAAGAAGGTTCATCAAAAGGGAAGGAATGTGGGAAAGGTCTGTCAGAAGTGCAGGCGGAGGAACCAGCTGTCAGACTCCAGGAGGCTGTGCAACTTCCACCACCTCCTGATCTTGTGGTTGACCATCAGCGGCTCAAGGCTCTGCTGGAGCAGGCGGTGGTGAAGAGCGAGGGCTTCAGTGTGGATCATCTGGAGAGAGTTTTCTCTGCTCTCAGCCAGTGCATTTACCAGCACCGCCGAGACTACGACAAGACCAGACTCATAGagGCCATGGAGAGGCAAGTTGAGCATTTCGAAACATTCCTGTGA

Function

GO:

id name namespace
GO:0031936 negative regulation of chromatin silencing biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-210 Predicted to enable ATP hydrolysis activity; chromatin binding activity; and histone binding activity. Predicted to be involved in negative regulation of chromatin silencing and positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ATAD2B (ATPase family AAA domain containing 2B).

Ensembl:

ensembl_id ENSDART00000085416

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036678 lncRNA upstream 15195 44563932 ~ 44567256 (+) False XLOC_017606
TCONS_00036677 lncRNA upstream 15989 44563932 ~ 44566462 (+) False XLOC_017606
TCONS_00036679 lncRNA upstream 15989 44563939 ~ 44566462 (+) True XLOC_017606
TCONS_00034935 lncRNA upstream 44664 44516163 ~ 44537787 (+) True XLOC_017605
TCONS_00036676 lncRNA upstream 235292 44336006 ~ 44347159 (+) True XLOC_017603
TCONS_00036680 lncRNA downstream 631834 45424391 ~ 45425819 (+) True XLOC_017609
TCONS_00036681 lncRNA downstream 873601 45666158 ~ 45669350 (+) True XLOC_017611
TCONS_00036414 lncRNA downstream 1044341 45836898 ~ 45841825 (+) True XLOC_017613
TCONS_00036682 lncRNA downstream 1101611 45894168 ~ 45896540 (+) True XLOC_017616
TCONS_00036683 lncRNA downstream 1107591 45900148 ~ 45902157 (+) True XLOC_017617
TCONS_00034934 mRNA upstream 74060 44498056 ~ 44508391 (+) True XLOC_017604
TCONS_00034933 mRNA upstream 234829 44311448 ~ 44347622 (+) False XLOC_017603
TCONS_00034932 mRNA upstream 294963 44250691 ~ 44287488 (+) True XLOC_017602
TCONS_00034929 mRNA upstream 473232 44082532 ~ 44109219 (+) True XLOC_017599
TCONS_00034928 mRNA upstream 614474 43942278 ~ 43967977 (+) True XLOC_017597
TCONS_00034941 mRNA downstream 827519 45620076 ~ 45622385 (+) True XLOC_017610
TCONS_00034942 mRNA downstream 949009 45741566 ~ 45752016 (+) True XLOC_017612
TCONS_00034943 mRNA downstream 1060597 45853154 ~ 45857670 (+) True XLOC_017614
TCONS_00034944 mRNA downstream 1100616 45893173 ~ 45899149 (+) True XLOC_017615
TCONS_00034948 mRNA downstream 1248109 46040666 ~ 46043405 (+) False XLOC_017620
TCONS_00034931 other upstream 383636 44198698 ~ 44198815 (+) True XLOC_017601
TCONS_00034930 other upstream 442590 44139745 ~ 44139861 (+) True XLOC_017600
TCONS_00034912 other upstream 1572838 43006304 ~ 43009613 (+) True XLOC_017581
TCONS_00034905 other upstream 1949346 42632985 ~ 42633105 (+) True XLOC_017575
TCONS_00034862 other upstream 5250359 39331969 ~ 39332092 (+) True XLOC_017544
TCONS_00034940 other downstream 142482 44935039 ~ 44935155 (+) True XLOC_017608
TCONS_00034947 other downstream 1247034 46039591 ~ 46041367 (+) False XLOC_017620
TCONS_00034979 other downstream 1650023 46442580 ~ 46494784 (+) False XLOC_017646
TCONS_00034980 other downstream 1664487 46457044 ~ 46494690 (+) False XLOC_017646
TCONS_00034982 other downstream 1715988 46508545 ~ 46513858 (+) False XLOC_017646

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00004131 True 2733 mRNA 0.54 20 CM030121.1 34772500 ~ 34794138 (-)