RNA id: TCONS_00036681


Basic Information

Item Value
RNA id TCONS_00036681
length 2308
lncRNA type antisense_over
GC content 0.33
exon number 2
gene id XLOC_017611
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 45666158 ~ 45669350 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTTTGACAACAtctacacacatttttatttaggATACATTTAAACACATCAGCATATTTTATAGAATTATGTATAAAAGAATCTAATTATTCTACATTCTACCCATAGTGCATCTCATTTAAAAGTGCAACCAATGTGTTGCAATGATTTCACAGTGCTCGTCCGGAAGAGAAGAACAGAATCTGTGATTGGCATTAAATTAGTTTATTCTGGCTCTTAGAGCATTGTTCTTGTGTGTGTGGATTCATACTCCGAGTCTCTAAACAGCAAACATGCGAAAGGAAACGAGATGAATCACACACACTGAAACCAGCAGCACATCCATccgaatatacacacacacacacatttacacaaacagtTCAGTCAATTGCACAGCtggatgaagaagaaaaaaaaagattacattttGTTCTGCTGAGACCATCAGGGTTtcatttaaaggggcagttcactcaaaaatgctaatttgtgtttgtttacTTACTCTCAGGCCATACAAGATGGtgagttaatttgtttaaaagaacattaaagaagatttaacTCCTCATACAATACAGAGTCAAAAAAACATTCAAGCCTAATGAAATTAATACAACATGCTCCTGATAATGCATCGAGGTATTATCAAGTGAAACTGAAGCCATgaatattcattttgtttttagacTCTCACTGTTGCATTTTATGAAGGATTTCAGCAAAAATATCTATGTTTGAAGgtctgagagtgagtaaataaactgaaatgagtcatttttggcgaactattcctttaaaaatgAATCTGTGGTTTGATATAgtaaacaatataacaatatgcATCTTAATGAgtgtcatttaaaaaagaaatctgtttttaagAGACTTTAATAGCTCAGAGTGAGGCTATTAAATATAAAGCATTAGCTTTTAAACAAATTCTGTGAAGTCTTGCATTTCTGTTGTTCGTGACATTTTGAATACTAAATTGCATAAATGTTCAAAACTGTTCCCAATACACTCTTGAATATTAagaattatacatttttgtatacAAGCAAAATACACATTCTATACACCATCTCTGCATCCAGAAAGCAATTTGTCTACATAAAGCAAAAGTATTGTTTTGAATacgtttaaagggatagttcacttaaaaattacaattctgtcatcattgacTCACAATTTACTTGTTACAAatcttctttcttttgttaaatactcaagaaaatattttatgctgttgaacacaaaagaagatattttgaagaatgctgaaaacctgtaaccattgacttccatagtatttgtatttcctactatgaatgtcaatgttacaggtttcaaacattcttcaaaatatcttcttttgtgttcaacagaatacagaaactcataaaggtttgaaaccacttgagggagagtaaagagtgagtaaatgtttgtcttttaggtgaaccatccctttaagatagcgttttattcttattctttacAACACaagaaaatactttgaagaatgctgaaaacctatctttgtgttcaactgaagaaagaaactcataacggTTTAGAACCACTAgagggagagtaaacagtgagtaaatgtttggtttatttgggggtgaactatcccttaaagatAGCATTTTAGTCTTATCATCTacaacaccaaagaagatattttgaagaatggtggaaacctgtaaccattgacttccatagtacttgtatttccaactatggaagtcagtggttactggtttctaacattcttcaaaacatcttcttttgtgttcaacagaaataagaaaccataaaggtttagaaccacttgagggagagtaaaaagtgagtaaacgctCATTTTCTGAGTTGTACTAACCCCCCAAAAAATAGCATTTTATCCTTTACAACACacaagaagatagtttgaagaatgctaaaaacctgtaaccattaacttcaatagtatttgtatttccaactatacaagtcaatggttaccggtttcaaacattcttcgttatatattgttttaaaaacgtttaaaagtatagttcactcaaaaatgtaaattctgtcatttacctGTTCCAAatctgactttctttcttctgttgaacacaaaggaagatagtTTAAAGaattctgaaaacctgtaaccattgacatttctcaatggttaccggtttcaaaCATTCTATGAACTTTTTATTCTTGTCCTCTACAACGGTTGCCAAACCCTGTtactgaagGCACATGTCTGGATGACCTCCTTCAGGTTTCCTCCCTGCTCCTCCATTTTGAAGATG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036680 lncRNA upstream 240339 45424391 ~ 45425819 (+) True XLOC_017609
TCONS_00034939 lncRNA upstream 1051777 44609771 ~ 44614381 (+) True XLOC_017607
TCONS_00036678 lncRNA upstream 1098902 44563932 ~ 44567256 (+) False XLOC_017606
TCONS_00036677 lncRNA upstream 1099696 44563932 ~ 44566462 (+) False XLOC_017606
TCONS_00036679 lncRNA upstream 1099696 44563939 ~ 44566462 (+) True XLOC_017606
TCONS_00036414 lncRNA downstream 167548 45836898 ~ 45841825 (+) True XLOC_017613
TCONS_00036682 lncRNA downstream 224818 45894168 ~ 45896540 (+) True XLOC_017616
TCONS_00036683 lncRNA downstream 230798 45900148 ~ 45902157 (+) True XLOC_017617
TCONS_00034945 lncRNA downstream 316111 45985461 ~ 45986783 (+) True XLOC_017618
TCONS_00036684 lncRNA downstream 318567 45987917 ~ 45996432 (+) False XLOC_017619
TCONS_00034941 mRNA upstream 43773 45620076 ~ 45622385 (+) True XLOC_017610
TCONS_00034938 mRNA upstream 873601 44582451 ~ 44792557 (+) False XLOC_017607
TCONS_00034936 mRNA upstream 1027254 44582318 ~ 44638904 (+) False XLOC_017607
TCONS_00034937 mRNA upstream 1061467 44582321 ~ 44604691 (+) False XLOC_017607
TCONS_00034934 mRNA upstream 1157767 44498056 ~ 44508391 (+) True XLOC_017604
TCONS_00034942 mRNA downstream 72216 45741566 ~ 45752016 (+) True XLOC_017612
TCONS_00034943 mRNA downstream 183804 45853154 ~ 45857670 (+) True XLOC_017614
TCONS_00034944 mRNA downstream 223823 45893173 ~ 45899149 (+) True XLOC_017615
TCONS_00034948 mRNA downstream 371316 46040666 ~ 46043405 (+) False XLOC_017620
TCONS_00034950 mRNA downstream 462462 46131812 ~ 46132911 (+) True XLOC_017621
TCONS_00034940 other upstream 731003 44935039 ~ 44935155 (+) True XLOC_017608
TCONS_00034931 other upstream 1467343 44198698 ~ 44198815 (+) True XLOC_017601
TCONS_00034930 other upstream 1526297 44139745 ~ 44139861 (+) True XLOC_017600
TCONS_00034912 other upstream 2656545 43006304 ~ 43009613 (+) True XLOC_017581
TCONS_00034905 other upstream 3033053 42632985 ~ 42633105 (+) True XLOC_017575
TCONS_00034947 other downstream 370241 46039591 ~ 46041367 (+) False XLOC_017620
TCONS_00034979 other downstream 773230 46442580 ~ 46494784 (+) False XLOC_017646
TCONS_00034980 other downstream 787694 46457044 ~ 46494690 (+) False XLOC_017646
TCONS_00034982 other downstream 839195 46508545 ~ 46513858 (+) False XLOC_017646
TCONS_00035004 other downstream 1435360 47104710 ~ 47104873 (+) True XLOC_017657

Expression Profile

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