RNA id: TCONS_00034944


Basic Information

Item Value
RNA id TCONS_00034944
length 1961
RNA type mRNA
GC content 0.49
exon number 3
gene id XLOC_017615
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 45893173 ~ 45899149 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGTGCTGCACGCAGAGATGAGTCTCCAAACAGCCACGGAAAACTTCTGCTGACCACAAGTTTTcgatttctttaaaacaaaaacaaaaaatgacaaatCCAGGATTGTGCGATCTCGCGCTGTCACTTTTGGGATTGCTGCTGTCTTTGACCTGAGCGCTCGCGCACTTCATTAGAGTTTAGTAGAGTCTAGTCTGAAGTGTTGCACAAGTATGAACAAGAAGAGGCGACTTGAGCTGCGACGACTCTCTGTCGTGGGATAAAAAAATCGCTTGTGGATTAAAACACGAATTCATGAGGAACTTAGGAGACGACGGGAACGCAGACCGGCCACAGCGCTTCCTCCTCCGGAACTGACTGATCATGGTCGCCGTGGTCCGTGCTCTCACGGTGCTGTTGCTCGGTCAGGTGTTGCTGGGAGGTGCCGTTGGACTCATTCCCGAGATCGACCGACGGAAATACAGTGATTCGGGGAGACACACACCGGAGCGAACTGATACAAACTTCCTGAACGAGTTTGAGCTACGCTTGCTCAATATGTTCGGATTGAAGCGAAAACCCACCCCAAGCAAATCGGCAGTGGTCCCTCAGTACATGCTGGACTTGTATTATATGCACTCTGAAAACGATGACCCGAACATTCGGCGCCCGAGGAGCACTATGGGAAAACATGTAGAAAGGGCAGCCAGCAGAGCAAACACGATACGAAGTTTTCATCACGAAGAGGCTTTCGAGGCACTGTCCAGCCTGAAAGGAAAAACAACGCAGCAGTTTTTCTTCAACCTTACCTCCATTCCTGGCGAGGAGCTGATCTCCGCTGCGGAGCTGCGCATTTTCAGGGACCAAGTTCTCGGAGATGCCAGTACGAGTGGCTTCCACAGAATTAACATTTACGAGGTGTTCAGGCCAGCTTTGGCCCCCTCCAAAGAGCCTCTAACCAGACTTCTGGACACCCGTCTGGTGCAGGACTCTCACACGCGCTGGGAAAGCTTCGACGTGGGTTCAGCTGTGGCACGCTGGGCCCGCGAATCCCAGCACAACCATGGGCTCCTTGTAGAGGTGCTCCATCCTAAGGAGTCAGAAGTATCCGAGGAGGCTGAGAGCAACCGGAGGAAGCACGTGAGGGTCAGTCGTTCCCTTCACGCGGATGAGGACTCGTGGGCACAAGCCCGACCTCTGCTGGTAACCTACAGCCATGACGGTCAAGGCACAGCCGTCTTGCATTCGAACCGAGAAAAGCGGCAGGCTCGACGAGGGCAAAAGCCGAGGAGAAAGCACCACCAGCGCTCGAACTGTAGGCGACATGCTCTCTATGTGGACTTCAGTGATGTCGGCTGGAACGAGTGGATCGTGGCACCGCCAGGCTATCATGCTTTCTACTGCCATGGCGAGTGTCCGTTCCCTCTGCCGGACCATCTAAACTCCACCAACCATGCCATTGTCCAGACGCTGGTGAACTCGGTCAACTCCAACATTCCCAAAGCCTGTTGCATCCCGACGGAGCTCAGCCCTATCTCACTGCTGTACCTGGACGAGTACGAGAAGGTCATTCTTAAAAACTACCAGGACATGGTGGTGGAGGGCTGCGGTTGCCGATGAGAACAATCTCCCCAATGAAGACTTTTATTTATACAAAAGAGCGAGCTATTTTGGAGGAAGAAaagaaatatatatgaatatatttatgttgaatgaacaaaacaaaaaaaatgggaaaataaatattttaatgagaGTGCTTGCTTTTTCCAGTGGCTTCgaagatgattttttttcttgcccCATTCCAAAACAAGTGCAATGGCACATGAAGTATAATGCTCAGATTTTTATGATGTATTTATTGCATAACCactttatttgtaaatgtgtatttatcaTGAAAAAATATATGATCTTCATTCAGTGTGCATTTGGGAATACCTTATTtgataccaaaaaaataaacaatggatGATGAA

Function

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0001710 mesodermal cell fate commitment biological_process
GO:0061131 pancreas field specification biological_process
GO:0048752 semicircular canal morphogenesis biological_process
GO:0060876 semicircular canal formation biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0090008 hypoblast development biological_process
GO:0060395 SMAD protein signal transduction biological_process
GO:0055015 ventricular cardiac muscle cell development biological_process
GO:0045168 cell-cell signaling involved in cell fate commitment biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0048264 determination of ventral identity biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0030513 positive regulation of BMP signaling pathway biological_process
GO:0009950 dorsal/ventral axis specification biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0001889 liver development biological_process
GO:0021703 locus ceruleus development biological_process
GO:0060030 dorsal convergence biological_process
GO:0022008 neurogenesis biological_process
GO:0030903 notochord development biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0042664 negative regulation of endodermal cell fate specification biological_process
GO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylation biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005125 cytokine activity molecular_function
GO:0042802 identical protein binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0070700 BMP receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-474 Enables identical protein binding activity and protein heterodimerization activity. Acts upstream of or within several processes, including animal organ development; determination of bilateral symmetry; and gastrulation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including cardiovascular system; digestive system; ectoderm; fin; and mesoderm. Human ortholog(s) of this gene implicated in bone disease (multiple); hemochromatosis type 1; otosclerosis; prostate cancer; and tooth agenesis. Orthologous to human BMP2 (bone morphogenetic protein 2).

Ensembl:

ensembl_id ENSDART00000131169

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036414 lncRNA upstream 51348 45836898 ~ 45841825 (+) True XLOC_017613
TCONS_00036681 lncRNA upstream 223823 45666158 ~ 45669350 (+) True XLOC_017611
TCONS_00036680 lncRNA upstream 467354 45424391 ~ 45425819 (+) True XLOC_017609
TCONS_00034939 lncRNA upstream 1278792 44609771 ~ 44614381 (+) True XLOC_017607
TCONS_00036679 lncRNA upstream 1326711 44563939 ~ 44566462 (+) True XLOC_017606
TCONS_00036683 lncRNA downstream 999 45900148 ~ 45902157 (+) True XLOC_017617
TCONS_00034945 lncRNA downstream 86312 45985461 ~ 45986783 (+) True XLOC_017618
TCONS_00036684 lncRNA downstream 88768 45987917 ~ 45996432 (+) False XLOC_017619
TCONS_00036685 lncRNA downstream 88785 45987934 ~ 45996432 (+) False XLOC_017619
TCONS_00036686 lncRNA downstream 88794 45987943 ~ 45996432 (+) False XLOC_017619
TCONS_00034943 mRNA upstream 35503 45853154 ~ 45857670 (+) True XLOC_017614
TCONS_00034942 mRNA upstream 141157 45741566 ~ 45752016 (+) True XLOC_017612
TCONS_00034941 mRNA upstream 270788 45620076 ~ 45622385 (+) True XLOC_017610
TCONS_00034938 mRNA upstream 1100616 44582451 ~ 44792557 (+) False XLOC_017607
TCONS_00034936 mRNA upstream 1254269 44582318 ~ 44638904 (+) False XLOC_017607
TCONS_00034948 mRNA downstream 141517 46040666 ~ 46043405 (+) False XLOC_017620
TCONS_00034950 mRNA downstream 232663 46131812 ~ 46132911 (+) True XLOC_017621
TCONS_00034951 mRNA downstream 273500 46172649 ~ 46173674 (+) True XLOC_017622
TCONS_00034952 mRNA downstream 277416 46176565 ~ 46177592 (+) True XLOC_017623
TCONS_00034953 mRNA downstream 284356 46183505 ~ 46184530 (+) True XLOC_017624
TCONS_00034940 other upstream 958018 44935039 ~ 44935155 (+) True XLOC_017608
TCONS_00034931 other upstream 1694358 44198698 ~ 44198815 (+) True XLOC_017601
TCONS_00034930 other upstream 1753312 44139745 ~ 44139861 (+) True XLOC_017600
TCONS_00034912 other upstream 2883560 43006304 ~ 43009613 (+) True XLOC_017581
TCONS_00034905 other upstream 3260068 42632985 ~ 42633105 (+) True XLOC_017575
TCONS_00034947 other downstream 140442 46039591 ~ 46041367 (+) False XLOC_017620
TCONS_00034979 other downstream 543431 46442580 ~ 46494784 (+) False XLOC_017646
TCONS_00034980 other downstream 557895 46457044 ~ 46494690 (+) False XLOC_017646
TCONS_00034982 other downstream 609396 46508545 ~ 46513858 (+) False XLOC_017646
TCONS_00035004 other downstream 1205561 47104710 ~ 47104873 (+) True XLOC_017657

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_05104260_05107686.mRNA True 2395 mRNA 0.49 2 CI01000029 5103219 ~ 5107804 (+)