RNA id: TU1885225


Basic Information

Item Value
RNA id TU1885225
length 418
lncRNA type intronic
GC content 0.41
exon number 2
gene id G1647593
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63568727 ~ 63570341 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagtgtaggatgactgtaggcctgtctataactgtaggcctatctaatagtgtaggatgactgtagacctatctaaTAGTGTAGGCCTGTCTATAACTGTAGACCTATCTAATAGTGTAGGCCTGTCTATAACTGTAGACCTATCTAATAGTGTAGGCCTGTCTATAACTGTAGGCCTATCTAATAGTGTAGGCCTGTCTATAACTGTAGGCCTATCTAATAGTGTAGGATGACTGTAGGCCTGTCTATAACTGTAGGCCTATCTAATAGTGTAGGCCTGTCTATAACTGTAGACCTATCTAATAGTGTAGGATGACTGTAGGCCTGTCTATAACTGTAGACCTATCTAATAGTGTAGGATGACTGTAGGCCTGTCTATAACTGTAGACCTATCTAATAGTGTAGGATGACTGTAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1885220 lncRNA upstream 764 63566993 ~ 63567963 (+) True G1647592
TU1885216 lncRNA upstream 12620 63552841 ~ 63556107 (+) False G1647589
TU1885215 lncRNA upstream 12620 63553082 ~ 63556107 (+) True G1647589
TU1885193 lncRNA upstream 29662 63538473 ~ 63539065 (+) True G1647573
TU1885170 lncRNA upstream 66589 63501876 ~ 63502138 (+) True G1647558
TU1885226 lncRNA downstream 880 63571221 ~ 63571915 (+) True G1647594
TU1885207 lncRNA downstream 14679 63585020 ~ 63587772 (+) True G1647583
TU1885237 lncRNA downstream 22061 63592402 ~ 63593498 (+) True G1647604
TU1885244 lncRNA downstream 44889 63615230 ~ 63615645 (+) True G1647611
TU1885245 lncRNA downstream 45317 63615658 ~ 63616031 (+) True G1647612
XM_036955363.1 mRNA upstream 3243 63557803 ~ 63565484 (+) True plek2
XM_036955361.1 mRNA upstream 34024 63506786 ~ 63534703 (+) False LOC110498294
XM_036955362.1 mRNA upstream 34024 63506786 ~ 63534703 (+) True LOC110498294
XM_036955360.1 mRNA upstream 68555 63435324 ~ 63500172 (+) False fbln5
XM_036955366.1 mRNA downstream 78028 63648369 ~ 63719010 (+) False LOC110514319
XM_036955367.1 mRNA downstream 78028 63648369 ~ 63719010 (+) True LOC110514319
XM_036955381.1 mRNA downstream 623168 64193509 ~ 64201734 (+) False ccdc177
XM_036955382.1 mRNA downstream 623633 64193974 ~ 64201734 (+) True ccdc177
XM_036955383.1 mRNA downstream 631879 64202220 ~ 64215617 (+) True LOC118941525
TU1885128 other upstream 176895 63391625 ~ 63391832 (+) False LOC110498409
TU1885075 other upstream 364670 63202756 ~ 63204057 (+) False G1647477
TU1884975 other upstream 491584 63075149 ~ 63077143 (+) True G1647411
TU1884898 other upstream 550039 63016955 ~ 63018688 (+) True G1647342
TU1883744 other upstream 1075008 62487001 ~ 62493719 (+) True srsf5a
TU1886125 other downstream 557867 64128208 ~ 64129068 (+) True G1648296
TU1886551 other downstream 1410023 64980364 ~ 64980943 (+) False G1648608
TU1887705 other downstream 1891432 65461773 ~ 65463454 (+) True G1649268
TU1887728 other downstream 1974036 65544377 ~ 65545055 (+) True G1649291
TU1887755 other downstream 2008098 65578439 ~ 65582582 (+) True G1649309

Expression Profile