RNA id: TU2378003


Basic Information

Item Value
RNA id TU2378003
length 1654
lncRNA type antisense_over
GC content 0.40
exon number 3
gene id G2079660
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 37747612 ~ 37893792 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcccctcctgaCCCTCCTCTGCCACGTCACCCTGCCAAGTGCTTCCATATCCCTTTAACTCCTAAACATGTTCCTCAATAAGCAATCAGTCCGAGTGGTGGTataatgtactgtgtgtgtgtgtgtgtgtgtgtgggagagagagcgtatgtatatgtgtgtttaagtgtgttggagagagtgtgtgtatatgtgtgtgtgtgtgtgtgtatatgtgtgtgtttaagtgtgttggagagagagtgtgtgtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatatgtgtgtgtttaagtgtgttggagagagagtgtgtgtatatgtgtgtgtgtgtgtatgtatatgtgtgtgtttaagtgtgttggagagagagtgtgtgtatatgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtttatgtgtgtgtttaagtgtgttgGAACACGTTTGAATCCATGTACGATTATTTGATTGACATTAAGTGATCCTGCTTTAAGtatgactgtatgtatgtatgtatgtatgtatgtatgtatgcatgtatgtatgtgggTGACTGTGTGCATGAACACATCCTGTACACAcagctatataaatatattagcATTTTATAATTTATCAGTTTAAGCTAAATGACAAATGGCCTCTATATTGAGATCAATTCAGTAACTGGTAAGTACTGTGACCGTGTGATGCTGCATACCACGTCTTTACAGCCACACAGCAGATCTAGTCGTTACAGATCTAGTCAGATAGCGGATCTAGTCAGACAGTGGATCTAGTCGTTACAGATCTAGTCAGATAGCGGATCTAGTCAGACAGTGGATCTAGACGTTACAGATCTAGTCAGATAGCGGATCTAGTCAGACAGTGGATCTAGACGTTACAGATCTAGTCAGATAGCGGATCTAGTCAGACAGCGGATCTAGTCGTTACAGATCTAGTCAGACAGCGGATCTAGACGTTACAGATCTATCTAAGAAACAGCTAGCAGCTGGAAGACAACCCTTGTTATCAGAAGTGGAAGATGAACTGAAGATCAGAAGGAGAAGTGGAACAGAGATTGTGAACAAAGAGAAGAGGTATAACTGTTCCAAGACAGTGCGTTGTTGGAAAATTAAAGGGTTAAAACAAACAGAAATGAATGAAATCAAAACCCTGTGCTGACATCTAATCGTTAGAAAATTTGGCAGCATAAATCGATGATGATGGCGTGATGATGAAGGTGGTGGTGGAAGTGTCCAGTACATTCCCACCATTGGATCTGGAACACACCAACAGAACACGGACCACAAGCAGAGCAACAGACACCCATGATTGGTCAATCACTCTGGAGTTCCAATGACAATGGAAAAAttgaaatgatgtaaaataaaatacaaaataaaaaaatgaaataaataaaacaaaagaaAACGACGTAATAAATTGACATATTGGCAAAtcaaagaagaagaaaagaattgttgtgtaaaaaaaaatctaaaaatcaGCTTTTATAAAACAGAATGCAGCAAGTGTCCGTTGCTCTTTAGTTTTGTTGTTGCAGACAGATGTGAGGTTGCCATGGTGACCATAAGAAGCCCGTGTAAGACTGGAGTAGTTGCATTACGTTGGACTCCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2377951 lncRNA upstream 771 37815848 ~ 37819286 (+) False G2079657
TU2377938 lncRNA upstream 771 37815878 ~ 37819286 (+) False G2079657
TU2377935 lncRNA upstream 42769 37737520 ~ 37777288 (+) True G2079656
TU2377916 lncRNA upstream 102496 37717080 ~ 37717561 (+) True G2079643
TU2377892 lncRNA upstream 148713 37670827 ~ 37671344 (+) True G2079621
TU2378007 lncRNA downstream 383 37822169 ~ 37824025 (+) True G2079661
TU2378036 lncRNA downstream 22071 37843857 ~ 37844332 (+) True G2079690
TU2378040 lncRNA downstream 29221 37851007 ~ 37936371 (+) False G2079693
TU2378039 lncRNA downstream 39025 37860811 ~ 37936371 (+) True G2079693
TU2378083 lncRNA downstream 97377 37919163 ~ 37919722 (+) True G2079733
XM_036965780.1 mRNA upstream 251184 37536529 ~ 37568873 (+) False LOC110508012
XM_036965781.1 mRNA upstream 251184 37552714 ~ 37568873 (+) True LOC110508012
trnat-agu-152 mRNA upstream 314255 37505729 ~ 37505802 (+) True trnat-agu-152
trnat-agu-151 mRNA upstream 314423 37505561 ~ 37505634 (+) True trnat-agu-151
XM_036965198.1 mRNA upstream 462451 37318716 ~ 37357606 (+) True mre11a
XM_021588455.2 mRNA downstream 230847 38052633 ~ 38060113 (+) True LOC110508017
LOC110507217 mRNA downstream 648132 38469918 ~ 38474599 (+) True LOC110507217
XM_021588440.2 mRNA downstream 797764 38619550 ~ 38628170 (+) True LOC110508002
XR_005040116.1 mRNA downstream 1217787 39039573 ~ 39039625 (+) True LOC118944799
XM_036965220.1 mRNA downstream 1846203 39667989 ~ 39681560 (+) False LOC110508028
TU2377942 other upstream 771 37815878 ~ 37819286 (+) False G2079657
TU2377944 other upstream 771 37815878 ~ 37819286 (+) True G2079657
TU2377712 other upstream 451921 37366739 ~ 37368136 (+) True G2079468
TU2377335 other upstream 539225 37279105 ~ 37280832 (+) True G2079197
TU2377138 other upstream 543200 37273486 ~ 37276857 (+) True LOC110536894
TU2378436 other downstream 123146 37944932 ~ 37945151 (+) True G2080014
TU2380510 other downstream 2005872 39827658 ~ 39837383 (+) True G2081884
TU2380477 other downstream 2073881 39895667 ~ 39913078 (+) False LOC110507223
TU2380578 other downstream 2110088 39931874 ~ 39933835 (+) True G2081949
TU2380828 other downstream 2135429 39957215 ~ 39957751 (+) True G2082162

Expression Profile