RNA id: TCONS_00000561


Basic Information

Item Value
RNA id TCONS_00000561
length 3371
RNA type mRNA
GC content 0.38
exon number 8
gene id XLOC_000331
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 27867706 ~ 27894817 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtgcaaatcttaaattcacagACTCGAGTTGAAAGCCATTAGTTTGTGGATGTAAAAATGCATATGCAACATTAATGGAGCGCGGATGACAGAGTGTGCATTCACAAATAATATGAGACAATAATCATCCCATAGTGAATGTCATAGACCTTCTTGGGAAAGGCTTGAGAGATAGTCTTATATTCAGGGccgttttaagattttttttagatcACTTGGGATTAGGTCATAGGAGGATTTAATAAAATTTGGATGATTCTGTCCATGTCTGTGCTGAGGAGCTGACACACAGCAACAGCTTTGGTCTGGCAACTGATGCTCTGAGATGGATGGGTCACTTCCACAATATATGGTCACTTTCCAGGTTTTTTTTCCCCAAGCTAAATAGATATTCAGATCCCCAACCCAAGTGCATGAGAAGTACAGCAGGCGGCGGTAATACTCCCAAGGAGTGAATGGCCATTAAACGAAAAAGAAGAAGAGGTAGACATGTACTCCTTACTCCGTACCAGCCGGTGGCAGTAATGCACCAGTTTGGTGTTTTCCAATTGCCCCTCTACGAAAAAAGAAGAATGCGAAAGTGTTGCTCCGAATCGAAAGTGCTGCTTGCCAGCTGATACAATAATGGAAGGGAATCGCGATGAagctaaaaaatgtttaaatattgcaGTTAAAGCCATCGAAGACGGTAATAAAAACAAGGCTTTGAAATTTCTATACAAAGCAGAAAAACTGTATCCAACAGAGAAAGCAAAAGTATTGTTGGAAGCTTTGCTGAACAATGGAAATTCGACAGGAAACAGTACTGCATACTGTGGGAAGTCATCAAATGGATCAAAGCCTGGATCACAAACCCAACATGAGGCACCAAAGCAAGACTCAGCAGCTGCAGATTTAACAAAAGGATTTACCAAAGAGCAAGCTGAAGGGGTACAAAGGATAAAGAAATGTAAGAACTACTATGAGGTACTGGGCATCAGAAAAGATGCCAGTGATGATGAACTAAAAAAAGCCTACAGACAGCTGGCTTTGAAATTCCACCCTGACAAAAACCACGCACCAGGAGCAACAGATGCCTTTAAAAAAATTGGAAATGCTTATTCAGTGCTCAGTAACCCAGAAAAGAAGAGGCAGTATGACTTAAGTGGAGGAGAGGAGCCCAGCACCCCAAATTACAGCTCTCATGAAGGATTCGATTTTCACAGAGGCTTTGAATCCGATATTACACCTGAAGATCTCTTTAACATGTTCTTTGGAGGCAGCTTTCCATCATctaattcACATGAATTCACCAATGGCCGAACATACAGTCATCATACAGAAGAAACCAGAGGAGAAAGAGTGGAAGAGAGGGGAGATGGTGGGTTTTCCATGTTTATTCAGCTGATGCCAATCGTTGTGCTGGTCTTGGTCTCAATCCTCAGCCAGCTGCTGGTTTCCACACCACCTTACAGCTTATACTCCAGACCCTCCACAGGACAAACCGTTAAGAGACAAACAGAGAATCTGCATGTGGACTATTTTGTCACCACAGATTTCAAATCCGAATATAAGGGCTCAGCTTTGCTAAAGATTGAGAAGAGCGTGGAGGAGGATTACGTTTCCAATGTGCGCAACAACTGCTGGAAGGAGAGGCAGACAAAAACAGACTTGCTGTATGCTGCAAAGGTCTACAGAGATGAAAGACTACAGCGAAAGGCTGAGCTCATGACCATGGAGAACTGCAAAGAGCTGGACCGATTAAATGACCTGTTCCGTGGAGGATAAACCACAAATTGAGACTAATGGACCCTTAAGACAATAGGACATcttatgtataaatgtattatgtgttgtttattttttgaacATCTTTATGTTAAAAGTCAATCATCTTTTGTTGCAATATGCATTGCTTCTTAGTAACAGTGAATCGTAAAAAGTTCCATCACTCCATTTCTATAATTTATATCTCTTTAATTGACTTAAACTGTGAAACTCTACATGTAGATGTTTTACACTTTCTTTAAACCAATTCTATTTTCTTCAGAGTTTAACTTAAGTAATTACTCCATGTCAGTGCTCTCTTGAAAGGTTTTTAGcaattctaataatttttttttttaatctgaaacaGATCAgatcaaatatacatttttaagtgGAGGACTACTCTGTTTTTTTCTAGAATATGATTAATAACTTCACCAATCATTTTTGTCCATCCATTGAAGTTTCACGAGTCAGAATATTTAATATGAATCAAGTGTATCAGGCCAAATAAGGCAATGAAACACTTGTTTAAAAATAGAGCTCTCCAAAATAGTGTAAATGGCAGCCCTATAGTGAATGCTTGATGTATGAGATCAAATCAGCTGTGGATAAAttttatggcttttttttttttttttttttgatgttatAATTTTTGGTTTTGAAGGCTTTCTGTGGATGTAcagaaataatgacagaatattaAGAAATAAGTCTATTAAGTTCTGCAGATGATATTACATGATGGGGAGTAAATGAATACATGCTTTAATTTCTGGCTAAAGAATGTTAAAAGAATAAACTGATATTTGATATTTCTGGACACAAGTACTTCTCAAATGTGTTCtaatatgttattttaattaagtgGTACTTTAAAATTGTTCTTAACCATACAATGCATTTGGGTAAAAATAATTGTCTAATTTTTgcattgtgtatgtatatactgtatactttTAAAGTGAAAGGGGTCTGCCAGTACCCCTTTAACAGGTCGAATTTACTTACGAATTTAGCAGCACCTACTTGATCCACACAGTGTTAGACTCTGGGAAGTGGAAAAGCATCAGGTTAAGAGATCTTATTTATCTTTCGATAATTTGTACACAAAGTCGATATGTATTATCAGATTTTTTAAACCAATAAGCAGGGTGAATTCCAACTAGAATAAGATGGTTTTGCTAAATTATTATCAAGCAAATACTGAACCTCAGCCTCTAACGCCTGTTGCTTTACCAGTGGCCCTCAATAAAAACGCTGACGAACAGGTGTTGCGGCACCAACATCCACGTTATGTTCGATCAGATGGGTGCGAGATGGAACATCACCAAACAAATCTGGGAATTTGTGTACCAGCTTTATCAATTCTCCCTCTTGAGAAATAGTTAGATGGCTCATTAAATTCTCTAAAAAGAGTCTCTAAATTGGATAACATCTGTTACAGCACACAATCGGAGCACCAACTTTCTCCATCTTCGGCACAATTTCATCTGTCCGAGAAACAGTTAATatagcagatgttttacaatcaGTCTGATCACGGGAAAAATAtggttttaataaatttacatgGCACAGCTGCTCAGACTACTTTCGATCTGGAgttgaaataaaat

Function

GO:

id name namespace
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0071218 cellular response to misfolded protein biological_process
GO:0051085 chaperone cofactor-dependent protein refolding biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0030544 Hsp70 protein binding molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-061110-138 Predicted to enable Hsp70 protein binding activity. Predicted to be involved in cellular response to misfolded protein; chaperone cofactor-dependent protein refolding; and ubiquitin-dependent ERAD pathway. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human DNAJB14 (DnaJ heat shock protein family (Hsp40) member B14).

Ensembl:

ensembl_id ENSDART00000102337

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003079 lncRNA upstream 151455 27713379 ~ 27716251 (+) False XLOC_000329
TCONS_00003078 lncRNA upstream 1126557 26740115 ~ 26741149 (+) True XLOC_000327
TCONS_00003077 lncRNA upstream 1197603 26664689 ~ 26670103 (+) False XLOC_000325
TCONS_00000545 lncRNA upstream 1197821 26668026 ~ 26669885 (+) True XLOC_000325
TCONS_00000540 lncRNA upstream 1216479 26649027 ~ 26651227 (+) True XLOC_000324
TCONS_00000566 lncRNA downstream 82572 27977389 ~ 27995053 (+) False XLOC_000332
TCONS_00000568 lncRNA downstream 136880 28031697 ~ 28036148 (+) False XLOC_000333
TCONS_00000570 lncRNA downstream 136891 28031708 ~ 28036148 (+) False XLOC_000333
TCONS_00003080 lncRNA downstream 577382 28472199 ~ 28473413 (+) True XLOC_000335
TCONS_00000576 lncRNA downstream 1008953 28903770 ~ 28904635 (+) True XLOC_000336
TCONS_00000560 mRNA upstream 6558 27825980 ~ 27861148 (+) True XLOC_000330
TCONS_00000559 mRNA upstream 6562 27808916 ~ 27861144 (+) False XLOC_000330
TCONS_00000558 mRNA upstream 134527 27713380 ~ 27733179 (+) True XLOC_000329
TCONS_00000554 mRNA upstream 655247 27070760 ~ 27212459 (+) False XLOC_000328
TCONS_00000556 mRNA upstream 655247 27153859 ~ 27212459 (+) True XLOC_000328
TCONS_00000563 mRNA downstream 82480 27977297 ~ 28020042 (+) False XLOC_000332
TCONS_00000564 mRNA downstream 82514 27977331 ~ 28019225 (+) False XLOC_000332
TCONS_00000569 mRNA downstream 136880 28031697 ~ 28046806 (+) False XLOC_000333
TCONS_00000571 mRNA downstream 136891 28031708 ~ 28045997 (+) False XLOC_000333
TCONS_00000572 mRNA downstream 136936 28031753 ~ 28036214 (+) False XLOC_000333
TCONS_00000557 other upstream 136726 27713349 ~ 27730980 (+) False XLOC_000329
TCONS_00000518 other upstream 1748082 26111385 ~ 26119624 (+) True XLOC_000317
TCONS_00000495 other upstream 2747501 25120089 ~ 25120205 (+) True XLOC_000301
TCONS_00000490 other upstream 3483009 24382967 ~ 24384697 (+) True XLOC_000295
TCONS_00000480 other upstream 3753148 24114525 ~ 24114558 (+) True XLOC_000287
TCONS_00000565 other downstream 82553 27977370 ~ 28001937 (+) False XLOC_000332
TCONS_00000567 other downstream 89576 27984393 ~ 27995611 (+) True XLOC_000332
TCONS_00000579 other downstream 1173845 29068662 ~ 29080336 (+) False XLOC_000337
TCONS_00000608 other downstream 1936942 29831759 ~ 29860373 (+) False XLOC_000356
TCONS_00000617 other downstream 2271136 30165953 ~ 30166065 (+) True XLOC_000360

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000362_00584040_00625843.mRNA True 2234 mRNA 0.48 11 CI01000362 584006 ~ 625901 (-)